clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF019M02 | Sequence | 496 | 012022 (10) | ref|XP_009606124.1| | 146 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| | 766 | 012022 (10) | ref|XP_009606124.1| | 198 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| |
JMFN013P12 | Sequence | 620 | 012022 (10) | ref|XP_003556162.1| | 9e-53 | PREDICTED: uncharacterized protein LOC100776918 isoform X1 [Glycine max] gb|KHN | |||||
JMSF009M16 | Sequence | 257 | 012022 (10) | ref|XP_009606124.1| | 51.2 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| | 697 | 012022 (10) | ref|XP_009606124.1| | 199 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| |
JMSF013J08 | Sequence | 187 | 012022 (10) | 684 | 012022 (10) | ref|XP_009606124.1| | 198 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| | |||
JMSF025A06 | Sequence | 699 | 012022 (10) | ref|XP_009606124.1| | 198 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| | |||||
JMSF025B08 | Sequence | 666 | 012022 (10) | ref|XP_009606124.1| | 129 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| | 715 | 024577 | ref|XP_006473097.1| | 5e-16 | PREDICTED: vegetative cell wall protein gp1-like [Citrus sinensis] gb|KDO83799.1 |
JMSF032H18 | Sequence | 708 | 012022 (10) | ref|XP_009606124.1| | 199 | PREDICTED: uncharacterized protein LOC104100576 [Nicotiana tomentosiformis] ref| | 589 | 000677 (67) | ref|XP_011003162.1| | 4e-89 | PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
JMFN013P12- GGCAAA
rJMFF019M02- TTCTTTTCTGTAACAAACTTGGGATATAACAGACTCAGATTATGGCAAA
____________________________________________________________
consensus TTCTTTTCTGTAACAAACTTGGGATATAACAGACTCAGATTATGGCAAA
. : . : . : . : . : . :
JMFN013P12- GAAGAACAAAATTTGTGTACTTTCTGAAGAAAAAGGAATTGATAGTGTTTATACATTGAA
rJMFF019M02- GAAGAACAAAATTTGTGTACTTTCTGAAGAAAAAGGAATTGATAGTGTTTATACATTGAA
JMSF025A06+ CTGAAGAAAAAGGAATTGATAGTGTTTATACATTGAA
rJMSF013J08- ATTGATAGTGTTTATACATTGAA
JMSF032H18+ CTGAAGAAAAAGGAATTGATAGTGTTTATACATTGAA
rJMSF009M16- ATTGATAGTGTTTATACATTGAA
____________________________________________________________
consensus GAAGAACAAAATTTGTGTACTTTCTGAAGAAAAAGGAATTGATAGTGTTTATACATTGAA
. : . : . : . : . : . :
JMFN013P12- CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAAATTTGGATATTACA
rJMFF019M02- CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAATATTGGATATTACA
JMSF025A06+ CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAATATTGGATATTACA
rJMSF013J08- CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAATATTGGATATTACA
JMSF032H18+ CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAATATTGGATATTACA
rJMSF009M16- CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAATATTGGATATTACA
____________________________________________________________
consensus CAAGCACATAAAAATGGATGACTAAAAGAAAAAAGATTACATGAAATATTGGATATTACA
. : . : . : . : . : . :
JMFN013P12- GCAGAAGGTAGAGAGAGTAGGATAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
rJMFF019M02- GCAGAAGGTAGAGAGAGTAGG-TAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
JMSF025A06+ GCAGAAGGTAGAGAGAGTAGG-TAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
rJMSF013J08- GCAGAAGGTAGAGAGAGTAGG-TAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
JMSF032H18+ GCAGAAGGTAGAGAGAGTAGG-TAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
rJMSF009M16- GCAGAAGGTAGAGAGAGTAGG-TAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
____________________________________________________________
consensus GCAGAAGGTAGAGAGAGTAGG-TAGGCTTGATTGATGATAAGCATGGTCTCATTCCAAGT
. : . : . : . : . : . :
JMFN013P12- CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
rJMFF019M02- CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
JMSF025A06+ CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
rJMSF013J08- CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
JMSF032H18+ CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
rJMSF009M16- CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
____________________________________________________________
consensus CTAGAATCCCGAAATTCGAAAGTAGAATCTTAACTTGATCAACAAAGTCAGAGCCTGTAG
. : . : . : . : . : . :
JMFN013P12- CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
rJMFF019M02- CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
JMSF025A06+ CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
JMFF019M02+ ATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
rJMSF013J08- CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
JMSF032H18+ CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
rJMSF009M16- CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
JMSF025B08+ CTGCCATTGGCGATTT
____________________________________________________________
consensus CGTACTCCGTCAACATCCCAACAGCAAAACCAAACATCGCCCATCTGCCATTGGCGATTT
. : . : . : . : . : . :
JMFN013P12- CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
rJMFF019M02- CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
JMSF025A06+ CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
JMFF019M02+ CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
rJMSF013J08- CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
JMSF032H18+ CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
rJMSF009M16- CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
JMSF025B08+ CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
____________________________________________________________
consensus CATTCTTGCCAATAAACCCAAAGAAGGGGCCTTGATTAGCATCGTCTAGCTTCTTCTGTT
. : . : . : . : . : . :
JMFN013P12- TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
rJMFF019M02- TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
JMSF025A06+ TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
JMFF019M02+ TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
rJMSF013J08- TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
JMSF032H18+ TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
rJMSF009M16- TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
JMSF025B08+ TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
____________________________________________________________
consensus TGAAGTATTCCTGCAATTCCTTAGCCTTCTGGCGCTGAAACTCCAGGGTAACCACACTCT
. : . : . : . : . : . :
JMFN013P12- TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
rJMFF019M02- TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
JMSF025A06+ TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
JMFF019M02+ TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
rJMSF013J08- TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
JMSF032H18+ TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
rJMSF009M16- TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
JMSF009M16+ AG
JMSF025B08+ TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
____________________________________________________________
consensus TGTCCTCAACAGCCGCCGCCTTGGGAGGAGCACTCGGCGGCGGCGGCGGAGAAGCGGAAG
. : . : . : . : . : . :
JMFN013P12- GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
rJMFF019M02- GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
JMSF025A06+ GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
JMFF019M02+ GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
rJMSF013J08- GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
JMSF032H18+ GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
rJMSF009M16- GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
JMSF009M16+ GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
JMSF025B08+ GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
____________________________________________________________
consensus GCGGGACCGGCTTTACAGGCGTGGGAGGGGAAGGAGCCACGGGTCTTCTGAAAGGGCCTT
. : . : . : . : . : . :
JMFN013P12- CAGCTTGAGAGTTCCTTATGTTAAGTGCGGG
rJMFF019M02- CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
JMSF025A06+ CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
JMFF019M02+ CAGCTTGAGAGTTCCTTA
rJMSF013J08- CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
JMSF032H18+ CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
rJMSF009M16- CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
JMSF009M16+ CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
JMSF025B08+ CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
____________________________________________________________
consensus CAGCTTGAGAGTTCCTTATGTTAAGTGCGGGTGGCTTGGATACACAGAATCTCATAAAAG
. : . : . : . : . : . :
rJMFF019M02- TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
JMSF025A06+ TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
rJMSF013J08- TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
JMSF032H18+ TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
rJMSF009M16- TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
JMSF009M16+ TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
JMSF013J08+ TAGGAGGAAGAAGAAGANGGANTTGCNGGCGGCGATTGTACCACCGATCGGTTTGGGA
JMSF025B08+ TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
____________________________________________________________
consensus TATAGGAGGAAGAAGAAGAGGGAGTTGCTGGCGGCGATTGTACCACCGATCGGTTTGGGA
. : . : . : . : . : . :
rJMFF019M02- ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCAC
JMSF025A06+ ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
rJMSF013J08- ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
JMSF032H18+ ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
rJMSF009M16- ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
JMSF009M16+ ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
JMSF013J08+ ATNTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
JMSF025B08+ ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
____________________________________________________________
consensus ATTTGATGCATGGGAATGAAGACGATGATGCCACTGACATTTTCTTGATTCTTGGCACCG
. : . : . : . : . : . :
JMSF025A06+ C
rJMSF013J08- CA
JMSF032H18+ CAGAGGAAGAC
rJMSF009M16- CAGANGAAGACGAT
JMSF009M16+ CAGAGGAAGACGAT
JMSF013J08+ CAGAGGAAGACGATGGAGTAAGTGGATGACAGGAAAGTTGTTTGGTCAAATAGTTATCAG
JMSF025B08+ CAGAGGAAGACGATGGAGTAAGTGGATGACAGGAAAGTTGTTTGGTCAAATAGTTATCAG
____________________________________________________________
consensus CAGAGGAAGACGATGGAGTAAGTGGATGACAGGAAAGTTGTTTGGTCAAATAGTTATCAG
. : . : . : . : . : . :
JMSF013J08+ AAACTTCAT
JMSF025B08+ AAACTTCATGCTGCTGATTTGTGGATAACATCTGCCCAACCCAACACTACAAAACAACCC
____________________________________________________________
consensus AAACTTCATGCTGCTGATTTGTGGATAACATCTGCCCAACCCAACACTACAAAACAACCC