Contig 012021:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS117E10Sequence478012021 (2)emb|CDP17451.1|2e-44unnamed protein product, partial [Coffea canephora]
JMSF024O01Sequence605012021 (2)emb|CDP17451.1|3e-46unnamed protein product, partial [Coffea canephora]744015044emb|CDP15925.1|2e-53unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS117E10+                                                           GATGGAATCTGA
                      ____________________________________________________________
consensus                                                             GATGGAATCTGA
 
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JMFS117E10+           CCACTCAATTGATTTGATCTGAGAGACAAGCTTTGTAGCTGCCTGTAGTTATCACAAATG
                      ____________________________________________________________
consensus             CCACTCAATTGATTTGATCTGAGAGACAAGCTTTGTAGCTGCCTGTAGTTATCACAAATG
 
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JMFS117E10+           CCCGCCGGAATAATCCCAGAGAGACTATTGTATTTCATGGCTACAAATTGCAAGGAAGAA
JMSF024O01+                                                            GCAAGGAAGAA
                      ____________________________________________________________
consensus             CCCGCCGGAATAATCCCAGAGAGACTATTGTATTTCATGGCTACAAATTGCAAGGAAGAA
 
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JMFS117E10+           ATGTTGTATATAGTTGGGGGGATGTTTCCAGTGAGATTGTTGTAGGACAGATCCAAACTC
JMSF024O01+           ACGTTGTACAAAGTTGCAGGAATGTTTCCAGAGAGATGGTTGTAGGACATATCCAAACTC
                      ____________________________________________________________
consensus             ATGTTGTATATAGTTGGGGGGATGTTTCCAGTGAGATTGTTGTAGGACATATCCAAACTC
 
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JMFS117E10+           TGGAGTTTGGTCAAGAATCCAATGCTTTCTGGGATTTGGCCATGGAAACTATTGGTGCTG
JMSF024O01+           TGGAGTTTGGTCAAGAATCCAATGCTTTCTGGGATTTGGCCATGGAAACTATTGCTGCTG
                      ____________________________________________________________
consensus             TGGAGTTTGGTCAAGAATCCAATGCTTTCTGGGATTTGGCCATGGAAACTATTGGTGCTG
 
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JMFS117E10+           ATGTTGAAAGTTGCAAGGAATGAGAGGCCACCAATCTCCTCAGGAATGGTGCCGTTGAGA
JMSF024O01+           ATGTTGAAAGTTGCAAGGAATGAGAGGCCACCAATCTCCTCAGGAATGGTGCCTTTGAGA
                      ____________________________________________________________
consensus             ATGTTGAAAGTTGCAAGGAATGAGAGGCCACCAATCTCCTCAGGAATGGTGCCTTTGAGA
 
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JMFS117E10+           CCCATATTGAAGAGATTCAATTGGGTCACTCTTTGGTGCTTAGC---ATTGCAAGTAACG
JMSF024O01+           CCCATATTGAAGAGATTCAATTGGGTCACTCTTTGGTGCTTAGCATTATTGCAAGTAATG
                      ____________________________________________________________
consensus             CCCATATTGAAGAGATTCAATTGGGTCACTCTTTGGTGCTTAGCATTATTGCAAGTAATG
 
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JMFS117E10+           CCAATCCAATCACAGTGTGGAGTTTGGAGAGACCAATTGTTGGACAAGATTTGAAAAGGG
JMSF024O01+           CCAATCCAATCACAGTGTGGAGTTTGGAGAGACCAGTTGTTGGACAAGATTTGAAAAGGG
                      ____________________________________________________________
consensus             CCAATCCAATCACAGTGTGGAGTTTGGAGAGACCAGTTGTTGGACAAGATTTGAAAAGGG
 
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JMFS117E10+           TCGGATGTGATTGCTCCTTTCAATGCCAATAGAGCAGTCTCATCAGATG           
JMSF024O01+           TCGGATGTGATTGCTCCTTTCAATGCCAATAGAGCAGCCTCATCAGATGATGATACCGTG
                      ____________________________________________________________
consensus             TCGGATGTGATTGCTCCTTTCAATGCCAATAGAGCAGTCTCATCAGATGATGATACCGTG
 
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JMSF024O01+           GAGGCCACGGCATGAGTTCCAATTGAAAGGGATTGCACTAAAACAACCAAAACCAAACAC
                      ____________________________________________________________
consensus             GAGGCCACGGCATGAGTTCCAATTGAAAGGGATTGCACTAAAACAACCAAAACCAAACAC
 
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JMSF024O01+           CATTGCATTGATACTAAGAAACTCATATTTGCATGCAAGCAACCTACCCAATTACTTCTC
                      ____________________________________________________________
consensus             CATTGCATTGATACTAAGAAACTCATATTTGCATGCAAGCAACCTACCCAATTACTTCTC