Contig 012018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143G04Sequence627012018 (3)ref|XP_009587533.1|1e-81PREDICTED: ribosome biogenesis protein BMS1 homolog isoform X2 [Nicotiana tomen
JMSF023E24Sequence635012018 (3)ref|XP_009587533.1|4e-74PREDICTED: ribosome biogenesis protein BMS1 homolog isoform X2 [Nicotiana tomen797001364 (2)ref|XP_010094092.1|1e-61hypothetical protein L484_018109 [Morus notabilis] gb|EXB55182.1| hypothetical p
JMSF024D24Sequence628012018 (3)ref|XP_009587533.1|4e-66PREDICTED: ribosome biogenesis protein BMS1 homolog isoform X2 [Nicotiana tomen772001364 (2)ref|XP_010094092.1|5e-65hypothetical protein L484_018109 [Morus notabilis] gb|EXB55182.1| hypothetical p

Alignment

This contig is upended


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JMFS143G04+                                     GAGAACACCCATAACTTTAGGGAACCCATGATTN
                      ____________________________________________________________
consensus                                       GAGAACACCCATAACTTTAGGGAACCCATGATTN
 
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JMFS143G04+           TGCAATATATTAAGGAACTCAAAAGTTTCCATTTCAAATCCATAGCTTCCATCAATGAGA
JMSF023E24+           TGCAATATATTAAGGAACTCAAAAGTTTCCATTTCAAATCCATAGCTTCCATCAATGAGA
JMSF024D24+                                           TTCAAATCCATAGCTTCCATCAATGAGA
                      ____________________________________________________________
consensus             TGCAATATATTAAGGAACTCAAAAGTTTCCATTTCAAATCCATAGCTTCCATCAATGAGA
 
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JMFS143G04+           AGCAATGCTAAATCAGCAAACTTTGCAACATCAATCATGCCATTGATATCATTTGGGCAC
JMSF023E24+           AGCAATGCTAAATCAGCAAACTTTGCAACATCAATCATGCCATTGATATCATTTGGGCAC
JMSF024D24+           AGCAATGCTAAATCAGCAAACTTTGCAACATCAATCATGCCATTGATATCATTTGGGCAC
                      ____________________________________________________________
consensus             AGCAATGCTAAATCAGCAAACTTTGCAACATCAATCATGCCATTGATATCATTTGGGCAC
 
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JMFS143G04+           TCCACAAACTGCAAACGCCTTTGCTTTCCTGATACAATAGTAATAGGACCACGAACTTCA
JMSF023E24+           TCCACAAACTGCAAACGCCTTTGCTTTCCTGATACAATAGTAATAGGACCACGAACTTCA
JMSF024D24+           TCCACAAACTGCAAACGCCTTTGCTTTCCTGATACAATAGTAATAGGACCACGAACTTCA
                      ____________________________________________________________
consensus             TCCACAAACTGCAAACGCCTTTGCTTTCCTGATACAATAGTAATAGGACCACGAACTTCA
 
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JMFS143G04+           GGTAAATTATGCTTTGTGTAGTGCTTGACAAGAGTCTTTATAAGCAGCGATTTTCCGACC
JMSF023E24+           GGTAAATTATGCTTTGTGTAGTGCTTGACAAGAGTCTTTATAAGCAGCGATTTTCCGACC
JMSF024D24+           GGTAAATTATGCTTTGTGTAGTGCTTGACAAGAGTCTTTATAAGCAGCGATTTTCCGACC
                      ____________________________________________________________
consensus             GGTAAATTATGCTTTGTGTAGTGCTTGACAAGAGTCTTTATAAGCAGCGATTTTCCGACC
 
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JMFS143G04+           TTGGGCGGTCCCTGGACTACAACAACAAAGGGAGCTGGCTCCCCGGTGGAGCGGTCAATT
JMSF023E24+           TTGGGCGGTCCCTGGACTACAACAACAAAGGGAGCTGGCTCCCCGGTGGAGCGGTCAATT
JMSF024D24+           TTGGGCGGTCCCTGGACTACAACAACAAAGGGAGCTGGCTCCCCGGTGGAGCGGTCAATT
                      ____________________________________________________________
consensus             TTGGGCGGTCCCTGGACTACAACAACAAAGGGAGCTGGCTCCCCGGTGGAGCGGTCAATT
 
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JMFS143G04+           GTCGGGACATGAAGCCTCCGCTGCTCCTTCTCGGTAGCTCGGGATTGCAGCCGCTTGGCT
JMSF023E24+           GTCGGGACATGAAGCCTCCGCTGCTCCTTCTCGGTAGCTCGGGATTGCAGCCGCTTGGCT
JMSF024D24+           GTCGGGACATGAAGCCTCCGCTGCTCCTTCTCGGTAGCTCGGGATTGCAGCCGCTTGGCT
                      ____________________________________________________________
consensus             GTCGGGACATGAAGCCTCCGCTGCTCCTTCTCGGTAGCTCGGGATTGCAGCCGCTTGGCT
 
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JMFS143G04+           TTTACTGTTGAAGTGAATGCAAACGCCTTAGGATTTTTTTGTTTTTGACTTTCGTCAATG
JMSF023E24+           TTTACTGTTGAAGTGAATGCAAACGCCTTAGGATTTTTTTGTTTTTGACTTTCGTCAATG
JMSF024D24+           TTTACTGTTGAAGTGAATGCAAACGCCTTAGGATTTTTTTGTTTTTGACTTTCGTCAATG
                      ____________________________________________________________
consensus             TTTACTGTTGAAGTGAATGCAAACGCCTTAGGATTTTTTTGTTTTTGACTTTCGTCAATG
 
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JMFS143G04+           GACTTCGATTTCTTCTTAGCTGAGGAGCCAGACTGCCGCTTCCTGTGCGACTTGTGCGAC
JMSF023E24+           GACTTCGATTTCTTCTTAGCTGAGGAGCCAGACTGCCGCTTCCTGTGCGACTTGTGCGAC
JMSF024D24+           GACTTCGATTTCTTCTTAGCTGAGGAGCCAGACTGCCGCTTCCTGTGCGACTTGTGCGAC
                      ____________________________________________________________
consensus             GACTTCGATTTCTTCTTAGCTGAGGAGCCAGACTGCCGCTTCCTGTGCGACTTGTGCGAC
 
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JMFS143G04+           TGCTCCTTACTGCCTTCAACCGCCATAGCTAGTTTTCAAAGGGAGACGGATTCCAGAGGG
JMSF023E24+           TGCTCCTTACTGCCTTCAACCGCCATAGCTAGTTTTCAAAGGGAGACGGATTCCAGAGGG
JMSF024D24+           TGCTCCTTACTGCCTTCAACCGCCATAGCTAGTTTTCAAAGGGAGACGGATTCCAGAGGG
                      ____________________________________________________________
consensus             TGCTCCTTACTGCCTTCAACCGCCATAGCTAGTTTTCAAAGGGAGACGGATTCCAGAGGG
 
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JMFS143G04+           CGAGGCGAAGTTTTTTAGAGTGAGTTCATGAAGGCTGTTGTTGAAGCTGATGA       
JMSF023E24+           CGAGGCGAAGTTTTTTAGAGTGAGTTCATGAAGGCTGTTGTTGAAGCTGATGATTATGGA
JMSF024D24+           CGAGGCGAAGTTTTTTAGAGTGAGTTCATGAAGGCTGTTGTTGAAGCTGATGATTATGGA
                      ____________________________________________________________
consensus             CGAGGCGAAGTTTTTTAGAGTGAGTTCATGAAGGCTGTTGTTGAAGCTGATGATTATGGA
 
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JMSF023E24+           GGTTAATGGGGGGTGAGGAGGCGAAAGCCAGC                            
JMSF024D24+           GGTTAATGGGGGGTGAGGAGGCGAAAGCCAGCGGCGGGATTATGGCGCCGGTGACCTGCC
                      ____________________________________________________________
consensus             GGTTAATGGGGGGTGAGGAGGCGAAAGCCAGCGGCGGGATTATGGCGCCGGTGACCTGCC