Contig 012012:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN020C06Sequence615012012 (2)ref|XP_009605636.1|1e-75PREDICTED: transcription initiation factor TFIID subunit 13-like [Nicotiana tom
JMSF023I18Sequence658012012 (2)ref|XP_009605636.1|1e-76PREDICTED: transcription initiation factor TFIID subunit 13-like [Nicotiana tom

Alignment

This contig is upended


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JMFN020C06+                                  ACAGAGCTTCATAGACTATTCAAGTGTTGCCAGCTTC
JMSF023I18+             TAGAGCCAGAAAGCAAAATGAACAGAGCTTCATAGACTATTCAAGTGTTGCCAGCTTC
                      ____________________________________________________________
consensus               TAGAGCCAGAAAGCAAAATGAACAGAGCTTCATAGACTATTCAAGTGTTGCCAGCTTC
 
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JMFN020C06+           TCTTCATCAACCTCAAAGGCCTTCCTGGCTTGTTTCAGTTCCTCATTCATGGACAACAAC
JMSF023I18+           TCTTCATCAACCTCAAAGGCCTTCCTGGCTTGTTTCAGTTCCTCATTCATGGACAACAAC
                      ____________________________________________________________
consensus             TCTTCATCAACCTCAAAGGCCTTCCTGGCTTGTTTCAGTTCCTCATTCATGGACAACAAC
 
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JMFN020C06+           TCTGTGCACCGGTTAAGTTTTGGAAAGTCCTTCCGAATCAAAAACAGAAAATCCTCTGTC
JMSF023I18+           TCTGTGCACCGGTTAAGTTTTGGAAAGTCCTTCCGAATCAAAAACAGAAAATCCTCTGTC
                      ____________________________________________________________
consensus             TCTGTGCACCGGTTAAGTTTTGGAAAGTCCTTCCGAATCAAAAACAGAAAATCCTCTGTC
 
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JMFN020C06+           ATACGCCTCTCTCTTTTCGTTGCAAAATCTTGAGCTTTGTGCACCATATCTGTGACATAT
JMSF023I18+           ATACGCCTCCCTCTTTTCGTTGCAAAATCTTGAGCTTTGTGCACCATATCTGTGACATAT
                      ____________________________________________________________
consensus             ATACGCCTCTCTCTTTTCGTTGCAAAATCTTGAGCTTTGTGCACCATATCTGTGACATAT
 
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JMFN020C06+           TCCACAACAATGTCCTCCACAAGTGCAACAGTCTCTGGAAGTGGATGTTGATCATCTCCA
JMSF023I18+           TCCACAACAATGTCCTCCACAAGTGCAACAGTCTCTGGAAGTGGATGTTGATCATCTCCA
                      ____________________________________________________________
consensus             TCCACAACAATGTCCTCCACAAGTGCAACAGTCTCTGGAAGTGGATGTTGATCATCTCCA
 
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JMFN020C06+           AATCCATACATCATATGCTGCAAATCCTTCTGAAACATTCCACGTTTACGTTTAAATGAA
JMSF023I18+           AATCCATACATCATATGCTGCAAATCCTTCTGAAACATTCCACGTTTACGTTTAAATGAA
                      ____________________________________________________________
consensus             AATCCATACATCATATGCTGCAAATCCTTCTGAAACATTCCACGTTTACGTTTAAATGAA
 
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JMFN020C06+           CCTTCTGATGGCTGGGATGCTCCAACTTTTGCTTTTGACGATTGCCCCGCTGCTGAGTTA
JMSF023I18+           CCTTCTGATGGCTGGGATGCTCCAACTTTTGCTTTTGACGATTGCCCCGCTGCTGAGTTA
                      ____________________________________________________________
consensus             CCTTCTGATGGCTGGGATGCTCCAACTTTTGCTTTTGACGATTGCCCCGCTGCTGAGTTA
 
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JMFN020C06+           CTCATTTCTATGCAAGGTAATGTCCTTTGTTCAACCAGCAATTCTCTTCAGTATCAAATT
JMSF023I18+           CTCATTTCTATGCAAGGTAATGTCCTTTGTTCAACCAGCAATTCTCTTCAGTATCAAATT
                      ____________________________________________________________
consensus             CTCATTTCTATGCAAGGTAATGTCCTTTGTTCAACCAGCAATTCTCTTCAGTATCAAATT
 
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JMFN020C06+           CAATAGCTGAAAATATCCTTAACTGAGCAGCTGCAAGTGTTGCCGGACGACGGTGGAGCA
JMSF023I18+           CAATAGCTGAAAATATCCTTAACTGAGCAGCTGCAAGTGTTGCCGGACGACGGTGGAGCA
                      ____________________________________________________________
consensus             CAATAGCTGAAAATATCCTTAACTGAGCAGCTGCAAGTGTTGCCGGACGACGGTGGAGCA
 
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JMFN020C06+           GTGAACGAAGAATCGACAATCGGAGGGCGATGGAGCTGCGGCAGTGAGCAGAGTCGACGG
JMSF023I18+           GTGAACGAAGAATCGACAATCGGAGGGCGATGGAGCTGCGGCAGTGAGCAGAGTCGACGG
                      ____________________________________________________________
consensus             GTGAACGAAGAATCGACAATCGGAGGGCGATGGAGCTGCGGCAGTGAGCAGAGTCGACGG
 
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JMFN020C06+           AGGCACGGAAGAGCTTCGAGAGGTATAAGGTTGAAGAA                      
JMSF023I18+           AGGCACGGAAGAGCTTCGAGAGGTATAAGGTTGAAGAAGATGAATGACTCTAGAGGAGCC
                      ____________________________________________________________
consensus             AGGCACGGAAGAGCTTCGAGAGGTATAAGGTTGAAGAAGATGAATGACTCTAGAGGAGCC