Contig 012009:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023F16Sequence672012009 (2)gb|KJB78234.1|2e-98hypothetical protein B456_012G186500 [Gossypium raimondii]736012009 (2)gb|AGD80162.1|4e-14mixta-like 1 protein, partial [Maurandya scandens]

Alignment

This contig is upended


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rJMSF023F16-                       TTGACTGAAGTGAAAAACCTGGTTGTTAACATCAAAGTATGAGTTTA
                      ____________________________________________________________
consensus                          TTGACTGAAGTGAAAAACCTGGTTGTTAACATCAAAGTATGAGTTTA
 
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rJMSF023F16-          ACTTTGGAAGAGGTAGGTGAGGTGGGTGTAACATAATTATCGACTTCTCCTGTTTAATGA
                      ____________________________________________________________
consensus             ACTTTGGAAGAGGTAGGTGAGGTGGGTGTAACATAATTATCGACTTCTCCTGTTTAATGA
 
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rJMSF023F16-          TTATTATTAAAGGCTGATCAGATAACACACTGCACGTACTATCACACTAATAATCCTAAT
                      ____________________________________________________________
consensus             TTATTATTAAAGGCTGATCAGATAACACACTGCACGTACTATCACACTAATAATCCTAAT
 
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rJMSF023F16-          TAATTAATTAAGGATACTTATTAAGTGATAATATTTAGCTAGAAAACCGGCGAACCCACC
                      ____________________________________________________________
consensus             TAATTAATTAAGGATACTTATTAAGTGATAATATTTAGCTAGAAAACCGGCGAACCCACC
 
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rJMSF023F16-          GGAGACGCCATCAGATTATTAAGGATGCTGTTCCAGTAACGGCTGATGTCTTCCACGTCG
                      ____________________________________________________________
consensus             GGAGACGCCATCAGATTATTAAGGATGCTGTTCCAGTAACGGCTGATGTCTTCCACGTCG
 
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rJMSF023F16-          GCCGTGCCGCAGTTTCCGACGATATTGTCGTGGTCCAAGTATCCGGTGAGGGTTTCCGGT
                      ____________________________________________________________
consensus             GCCGTGCCGCAGTTTCCGACGATATTGTCGTGGTCCAAGTATCCGGTGAGGGTTTCCGGT
 
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rJMSF023F16-          GAAAGTTCCGTGAATCCATGAATGAAGGTTGGGAGCTCCGATAAGGGATCCATGGCAACG
                      ____________________________________________________________
consensus             GAAAGTTCCGTGAATCCATGAATGAAGGTTGGGAGCTCCGATAAGGGATCCATGGCAACG
 
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rJMSF023F16-          TGCGGGATTATGTCGTCGCCGGTGGTGTTAGGGTTTCCTATATTCCAAGAACTTTCGTGG
                      ____________________________________________________________
consensus             TGCGGGATTATGTCGTCGCCGGTGGTGTTAGGGTTTCCTATATTCCAAGAACTTTCGTGG
 
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rJMSF023F16-          TCGGAAAAGTTTAAGTTTTGGTCGGGAAAGTTTAAGTTTTGGTCAGAAAAGTTTAAGGTT
                      ____________________________________________________________
consensus             TCGGAAAAGTTTAAGTTTTGGTCGGGAAAGTTTAAGTTTTGGTCAGAAAAGTTTAAGGTT
 
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rJMSF023F16-          GTCGGAGATTGATGTGGAGTTGCGTTTGAGAGAAACGCGCCGTCGTGTACATGGGATAAT
                      ____________________________________________________________
consensus             GTCGGAGATTGATGTGGAGTTGCGTTTGAGAGAAACGCGCCGTCGTGTACATGGGATAAT
 
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rJMSF023F16-          GAAACCCTCGTCCTCGGCGGCTTGGTCCACGTTTCTTGCCAAGCTTTTAGCTCGTCGAGA
JMSF023F16+                                                           AGCTCGTCGAGA
                      ____________________________________________________________
consensus             GAAACCCTCGTCCTCGGCGGCTTGGTCCACGTTTCTTGCCAAGCTTTTAGCTCGTCGAGA
 
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rJMSF023F16-          GACGGCGGGACTTTGGGCGGCGGCGGCGGCGATGGCTTGTGGAGGCGGAAGTGGTGAGGT
JMSF023F16+           GACGGCGGGACTTTGGGCGGCGGCGGCGGCGATGGCTTGTGGAGGCGGAAGTGGTGAGGT
                      ____________________________________________________________
consensus             GACGGCGGGACTTTGGGCGGCGGCGGCGGCGATGGCTTGTGGAGGCGGAAGTGGTGAGGT
 
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rJMSF023F16-          GAGATAAGAGAGGAACTGATGAACTTAGA                               
JMSF023F16+           GAGATAAGAGAGGAACTGATGAACTTAGAGTGGCGGACGAGGCGAGCTTCGGCTTCCAGT
                      ____________________________________________________________
consensus             GAGATAAGAGAGGAACTGATGAACTTAGAGTGGCGGACGAGGCGAGCTTCGGCTTCCAGT
 
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JMSF023F16+           CGGGCGGTCTCCCACTGGGCCATGTGGCTGAGATTGGCGGCGGAGCCGAAGGAGGAGTTC
                      ____________________________________________________________
consensus             CGGGCGGTCTCCCACTGGGCCATGTGGCTGAGATTGGCGGCGGAGCCGAAGGAGGAGTTC
 
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JMSF023F16+           ATCTTTGGCCTATGCGTCATTGGATCAATGCCCATCTTACTTAGTTTCTTCTTCAAATGG
                      ____________________________________________________________
consensus             ATCTTTGGCCTATGCGTCATTGGATCAATGCCCATCTTACTTAGTTTCTTCTTCAAATGG
 
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JMSF023F16+           GTATTCCAGTAGTTCTTTATCTCATTATCTGTTCTCTTTGGCAGGTGAGCTGCAATGGCT
                      ____________________________________________________________
consensus             GTATTCCAGTAGTTCTTTATCTCATTATCTGTTCTCTTTGGCAGGTGAGCTGCAATGGCT
 
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JMSF023F16+           GACCATCTATTTCCAAGAAGAGCATGGAGTTGAATGATGGATTGTTCTTCTTGCAGACTA
                      ____________________________________________________________
consensus             GACCATCTATTTCCAAGAAGAGCATGGAGTTGAATGATGGATTGTTCTTCTTGCAGACTA
 
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JMSF023F16+           AAGTTTCCTCTTTTAATGTCAGGTCTCAAGTAATTAGTCCATCTCAGTCTGCAGCTCTTC
                      ____________________________________________________________
consensus             AAGTTTCCTCTTTTAATGTCAGGTCTCAAGTAATTAGTCCATCTCAGTCTGCAGCTCTTC
 
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JMSF023F16+           CCACATCTTTGCAGCCCAGCTTTTGCAGGCAAAGCTCTCCAGCTTCCATGGCCGTACTGC
                      ____________________________________________________________
consensus             CCACATCTTTGCAGCCCAGCTTTTGCAGGCAAAGCTCTCCAGCTTCCATGGCCGTACTGC
 
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JMSF023F16+           TCAATGTAAGCCAACAACTGGCTGTCTTCATCAGGTGTCCATGGTCCTTTCTTCAACCCT
                      ____________________________________________________________
consensus             TCAATGTAAGCCAACAACTGGCTGTCTTCATCAGGTGTCCATGGTCCTTTCTTCAACCCT
 
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JMSF023F16+           TCCTTTTCACAGCACGGTGACCTTCCCATTCTGATCAACTAACCCTATAGATCGAGACAG
                      ____________________________________________________________
consensus             TCCTTTTCACAGCACGGTGACCTTCCCATTCTGATCAACTAACCCTATAGATCGAGACAG
 
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JMSF023F16+           AGAGAGATAAATGTGGATTATGTTGTAGGATTTGGTGGCAACTGGCAAGGAGAATATGCC
                      ____________________________________________________________
consensus             AGAGAGATAAATGTGGATTATGTTGTAGGATTTGGTGGCAACTGGCAAGGAGAATATGCC