Contig 012003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022H02Sequence674012003 (2)ref|XP_010523865.1|2e-14PREDICTED: tricin synthase 1-like isoform X1 [Tarenaya hassleriana]767012003 (2)ref|XP_009605257.1|3e-83PREDICTED: tricin synthase 1-like isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF022H02-                                               TGGTTAATTTGAAGGGTATGCCA
                      ____________________________________________________________
consensus                                                  TGGTTAATTTGAAGGGTATGCCA
 
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rJMSF022H02-          ATTTTGATCTAATACACATTTTTTTTTAAGTTTACACAAATATAATGTAATGAAAGGTAA
                      ____________________________________________________________
consensus             ATTTTGATCTAATACACATTTTTTTTTAAGTTTACACAAATATAATGTAATGAAAGGTAA
 
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rJMSF022H02-          AGAAAACTATGATAAATGAAAAGAAAACAAGTCATCAACACAGGATAGCAGATTGTCATA
                      ____________________________________________________________
consensus             AGAAAACTATGATAAATGAAAAGAAAACAAGTCATCAACACAGGATAGCAGATTGTCATA
 
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rJMSF022H02-          GATACCCAATCTGTTTCTCTTCTCAACAAAATTCATCTTTTCCGGCAGATTGTCATGCCA
                      ____________________________________________________________
consensus             GATACCCAATCTGTTTCTCTTCTCAACAAAATTCATCTTTTCCGGCAGATTGTCATGCCA
 
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rJMSF022H02-          TCCCCGATTGGCACCATACTGATGTCTACGCGATTATCCTCCAACAATGTCCTATTGAAA
                      ____________________________________________________________
consensus             TCCCCGATTGGCACCATACTGATGTCTACGCGATTATCCTCCAACAATGTCCTATTGAAA
 
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rJMSF022H02-          CTCCTTATGCTCATCGTCTTGGAATCGTTTACCAGCGGATCAGCAACTCTCCCGTGCCAA
                      ____________________________________________________________
consensus             CTCCTTATGCTCATCGTCTTGGAATCGTTTACCAGCGGATCAGCAACTCTCCCGTGCCAA
 
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rJMSF022H02-          AGGACATTATCCACTACAACGACCCCTCCAACCCTTACCAGCTTTAGCAGCAACTCAAAG
                      ____________________________________________________________
consensus             AGGACATTATCCACTACAACGACCCCTCCAACCCTTACCAGCTTTAGCAGCAACTCAAAG
 
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rJMSF022H02-          TATTCCTGATACATTTTCTTATCGGCATCAATGAACGCAAAGTCATAACTGCAGCCTTCG
                      ____________________________________________________________
consensus             TATTCCTGATACATTTTCTTATCGGCATCAATGAACGCAAAGTCATAACTGCAGCCTTCG
 
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rJMSF022H02-          CCATTCTGAATCATGGACCGAAGAGTATCTGCTGCTATTCCACGTCTCACATCCACCTTG
                      ____________________________________________________________
consensus             CCATTCTGAATCATGGACCGAAGAGTATCTGCTGCTATTCCACGTCTCACATCCACCTTG
 
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rJMSF022H02-          CCTGACACACCCGCTCGGTCATAATATCTCTTTGCAACCTCGATTGATTTTTCGTCTCTC
                      ____________________________________________________________
consensus             CCTGACACACCCGCTCGGTCATAATATCTCTTTGCAACCTCGATTGATTTTTCGTCTCTC
 
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rJMSF022H02-          TCACAAGCAACTAAACGGCCTTGCTCTGGAAGAACTAAAGCAATGGCCAAGGATGAGTAT
JMSF022H02+                                                         CCAAGGATGAGTAT
                      ____________________________________________________________
consensus             TCACAAGCAACTAAACGGCCTTGCTCTGGAAGAACTAAAGCAATGGCCAAGGATGAGTAT
 
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rJMSF022H02-          CCAGTATAGATGCCAACTTCAATGCACCGTTTTGCTCCTTGGACCTGGACAAGCATTGCT
JMSF022H02+           CCAGTATAGATGCCAACTTCAATGCACCGTTTTGCTCCTTGGACCTGGACAAGCATTGCT
                      ____________________________________________________________
consensus             CCAGTATAGATGCCAACTTCAATGCACCGTTTTGCTCCTTGGACCTGGACAAGCATTGCT
 
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rJMSF022H02-          AGTAGCTGTGCTTGATCGGGG                                       
JMSF022H02+           AGTAGCTGTGCTTGATCGGGGGATACCTAAGACCTAGGAAAGAGATAAACCAAATGAGGT
                      ____________________________________________________________
consensus             AGTAGCTGTGCTTGATCGGGGGATACCTAAGACCTAGGAAAGAGATAAACCAAATGAGGT
 
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JMSF022H02+           TTTACACCTTACTTGCATCTGACTACCCCGCATTGTTGCAGTCTCCTCTCTAAGTTCACG
                      ____________________________________________________________
consensus             TTTACACCTTACTTGCATCTGACTACCCCGCATTGTTGCAGTCTCCTCTCTAAGTTCACG
 
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JMSF022H02+           CAATATCTCTGGTTCTCTGACATTGCCCAGTATATAATCATACAGTCGTGGAGTAACACT
                      ____________________________________________________________
consensus             CAATATCTCTGGTTCTCTGACATTGCCCAGTATATAATCATACAGTCGTGGAGTAACACT
 
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JMSF022H02+           GATAATCTGTTTACCCCCATATTCTGCATTATCAGACACAACTGTATCTACATCTGGTTT
                      ____________________________________________________________
consensus             GATAATCTGTTTACCCCCATATTCTGCATTATCAGACACAACTGTATCTACATCTGGTTT
 
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JMSF022H02+           CCATGCCCTAATCTGATTGTGCCTCTTAGTAGCCAATGAATTTATAAAGCAATTGGTGAA
                      ____________________________________________________________
consensus             CCATGCCCTAATCTGATTGTGCCTCTTAGTAGCCAATGAATTTATAAAGCAATTGGTGAA
 
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JMSF022H02+           ATGGCGGCAGTTCAATCGAGTTCGAGGCCCTAATATGAAACAAGGATTTGTGAGGATATG
                      ____________________________________________________________
consensus             ATGGCGGCAGTTCAATCGAGTTCGAGGCCCTAATATGAAACAAGGATTTGTGAGGATATG
 
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JMSF022H02+           AACCCGCACCCAGCTTGACATTAGAGAACGAATTGAGCTGAGTGAGATGGATTTTTTTCT
                      ____________________________________________________________
consensus             AACCCGCACCCAGCTTGACATTAGAGAACGAATTGAGCTGAGTGAGATGGATTTTTTTCT
 
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JMSF022H02+           GTCGAAAGCTTGAATTGTTCAGCTCAGGTTTTGCGGTGGCGAGTGCAATTAAGAGAGCTG
                      ____________________________________________________________
consensus             GTCGAAAGCTTGAATTGTTCAGCTCAGGTTTTGCGGTGGCGAGTGCAATTAAGAGAGCTG
 
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JMSF022H02+           AGCTAGGGCGGAGATATTGGCGGCGATGGACGGCGCGTGCAATTCAAGACTGATTGCTTA
                      ____________________________________________________________
consensus             AGCTAGGGCGGAGATATTGGCGGCGATGGACGGCGCGTGCAATTCAAGACTGATTGCTTA
 
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JMSF022H02+           GAGGAATCCGATTGGAGTGTCCGGCTGAGATGGCAACTGGAAGCGACAAGGCGAATTCCC
                      ____________________________________________________________
consensus             GAGGAATCCGATTGGAGTGTCCGGCTGAGATGGCAACTGGAAGCGACAAGGCGAATTCCC