Contig 012002:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022G16Sequence494012002 (2)ref|XP_004235290.1|5e-26PREDICTED: cell division cycle 20.2, cofactor of APC complex [Solanum lycopersi729001481 (2)ref|XP_006347559.1|5e-115PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Solanum tube
JMSF046M20Sequence632012002 (2)ref|XP_011075818.1|7e-41PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Sesamum indi747001481 (2)ref|XP_009626994.1|4e-114PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Nicotiana to

Alignment

This contig is upended


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JMSF046M20+                                       TCCAAAGTCCTCTCGGAAGTTTGAGGAATGTG
                      ____________________________________________________________
consensus                                         TCCAAAGTCCTCTCGGAAGTTTGAGGAATGTG
 
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JMSF046M20+           ACGCCTGGGTTTAGCTGGTTTGGCTTGGCNAGCAGCNGAAGTGAACTCGCTTGGAATGCC
                      ____________________________________________________________
consensus             ACGCCTGGGTTTAGCTGGTTTGGCTTGGCNAGCAGCNGAAGTGAACTCGCTTGGAATGCC
 
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JMSF046M20+           CTCCNCNGGGGTGGGTGGTTTGTTNTTGAAAGCNAGTNTCCGTGTNCGATTCATGTTAAG
JMSF022G16+                                                         CGATTCNTGTTAAG
                      ____________________________________________________________
consensus             CTCCNCNGGGGTGGGTGGTTTGTTNTTGAAAGCNAGTNTCCGTGTNCGATTCATGTTAAG
 
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JMSF046M20+           GNCCTCAGCCAGCTGTTTTNTATNTGCTTCCCTGGACGGTGAGCTGGTGGCTGGATTTTC
JMSF022G16+           GACCTCAGCNAGCTGTTTTCTATATGCTTCCCNGGACGGTGAGCTGGTGGCTGGATTTTC
                      ____________________________________________________________
consensus             GACCTCAGCCAGCTGTTTTCTATATGCTTCCCTGGACGGTGAGCTGGTGGCTGGATTTTC
 
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JMSF046M20+           CTTACCTTTCATCCCTCCCGTCNCCATNTAATGGGCAAAGTCAAAATCCCTTGCAGATNT
JMSF022G16+           CTTACCTTTCNTCCCTCCCGTCNCCATATAATGGGCAAAGTCAAAATCCCTTGCNGATNT
                      ____________________________________________________________
consensus             CTTACCTTTCATCCCTCCCGTCNCCATATAATGGGCAAAGTCAAAATCCCTTGCAGATNT
 
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JMSF046M20+           NTTNGGAATGAACCTNTCCNAATTTTCCCGNGAACTTTTCCTTTGCNGATACTGCTCGTG
JMSF022G16+           TTTNGGAATGNACCTNTCCAAATTTTCCCGAGAACTTTTCCTTTGCNGATNCTNCTCGTG
                      ____________________________________________________________
consensus             TTTNGGAATGAACCTNTCCAAATTTTCCCGAGAACTTTTCCTTTGCNGATACTGCTCGTG
 
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JMSF046M20+           AAGAGGAAGACGGGATTGAGTNTTGTTTGATGAAGCGGAGTTCCGCNATCCTGCNTCCNT
JMSF022G16+           AAGGGGAAGACGGGATTGAGTNTTGTTTGATGAAGCGGAGTTCCGCAATCCTGCATCCAT
                      ____________________________________________________________
consensus             AAGGGGAAGACGGGATTGAGTNTTGTTTGATGAAGCGGAGTTCCGCAATCCTGCATCCAT
 
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JMSF046M20+           CNCGTTAATAACCCCNAAGNTNCTNCTAGNGATNCAAAATTTCAATTNTGGNTTATACNG
JMSF022G16+           CNCGTTAATAACNCCNAAGATNCTNCTAGNGNTNCNAAATTTCAATTNTGGNTTNTNCNG
                      ____________________________________________________________
consensus             CNCGTTAATAACCCCNAAGATNCTNCTAGNGATNCAAAATTTCAATTNTGGNTTATACNG
 
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JMSF046M20+           AAAAAAAAAAATTAATTAATAAAATGAACAAGGGTCCTGCAAAAAAACAATATTAGAGCG
JMSF022G16+           AAAAAAAAAAATTAATTAATAAAATGAACAAGGGTCCTGCAAAAAAACAATATTAGAGCG
                      ____________________________________________________________
consensus             AAAAAAAAAAATTAATTAATAAAATGAACAAGGGTCCTGCAAAAAAACAATATTAGAGCG
 
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JMSF046M20+           TTAAGAGAAAAAAAATCAAAAAAATAAGAACAAGAAAGCAAGATTGAAATTGTTGAAGAT
JMSF022G16+           TTAAGAGAAAAAAAATCAAAAAAATAAGAACAAGAAAGCAAGATTGAAATTGTTGAAGAT
                      ____________________________________________________________
consensus             TTAAGAGAAAAAAAATCAAAAAAATAAGAACAAGAAAGCAAGATTGAAATTGTTGAAGAT
 
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JMSF046M20+           CGAGCAGCCAGCGATAGAATGAGCAGAGAGAAATGGGGATTGAGAGAATGAGAAATGATC
JMSF022G16+           CGAGCAGCCAGCGATAGAATGAGCAGAGAGAAATGGGGATTGAGAGAATGAGAAATGATC
                      ____________________________________________________________
consensus             CGAGCAGCCAGCGATAGAATGAGCAGAGAGAAATGGGGATTGAGAGAATGAGAAATGATC