Contig 011997:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014I13Sequence440011997 (8)emb|CDP14289.1|1e-25unnamed protein product [Coffea canephora]
JMFN013P19Sequence481011997 (8)emb|CDP14289.1|1e-25unnamed protein product [Coffea canephora]
JMFN019D21Sequence219011997 (8)
JMFN030M10Sequence462011997 (8)emb|CDP14289.1|1e-25unnamed protein product [Coffea canephora]
JMFS015G06Sequence459011997 (8)emb|CDP14289.1|7e-25unnamed protein product [Coffea canephora]
JMFS041G11Sequence474011997 (8)emb|CDP14289.1|1e-25unnamed protein product [Coffea canephora]
JMFS077F07Sequence484011997 (8)emb|CDP14289.1|1e-25unnamed protein product [Coffea canephora]
JMSF021I12Sequence490011997 (8)emb|CDP14289.1|1e-25unnamed protein product [Coffea canephora]231009909 (9)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+            AGCGTAGAAAAAACAGTTTGTGCTTCAATTTAGGCAAGTATGGTTGGAGTATAAACAAA
JMFS041G11+            AGCGTAGAAAAAACAGTTTGTGCTTCAATTTAGGCAAGTATGGTTGGAGTATAAACAAA
JMFN030M10+                                                                AAACAAA
JMFN013P19+                                                              ATAAACAAA
JMFS077F07+                                                              ATAAACAAA
                      ____________________________________________________________
consensus              AGCGTAGAAAAAACAGTTTGTGCTTCAATTTAGGCAAGTATGGTTGGAGTATAAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
JMFS041G11+           GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
rJMFF014I13-                         ATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
JMFN030M10+           GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
JMFN013P19+           GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
JMFS077F07+           GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
JMSF021I12+           GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
                      ____________________________________________________________
consensus             GCAGGGGAGAAGAGAATAGATTAGAAAACAAGGTTTTACATTAAAACCAATTACAACATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
JMFS041G11+           TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
rJMFF014I13-          TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
JMFN030M10+           TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
JMFN013P19+           TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
JMFS077F07+           TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
JMSF021I12+           TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
                      ____________________________________________________________
consensus             TTACAGACAGAAGCAAAGGTAGGTTTCTTGGTTTCTCACTTGTGGCAAATCTTGGCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
JMFS041G11+           GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
rJMFF014I13-          GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
JMFN030M10+           GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
JMFN013P19+           GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
JMFS077F07+           GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
JMSF021I12+           GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
                      ____________________________________________________________
consensus             GGCATTGTCACACAGATAGGTCCATACTTCTTCTTGGCCTCCAGAGTCCCTCTCTTCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
JMFS041G11+           TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
rJMFF014I13-          TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
JMFN030M10+           TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
JMFN013P19+           TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
JMFS077F07+           TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
JMSF021I12+           TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
                      ____________________________________________________________
consensus             TCGTCCGCCATGGCAATCTTGGCGATGGAGCACGCCGCCGCCATGGCAACGCCAAAAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
JMFS041G11+           AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
rJMFF014I13-          AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
JMFN030M10+           AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
JMFN019D21+            ACTCCCTCCTCCCGTTGATGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
JMFN013P19+           AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
JMFS077F07+           AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
JMSF021I12+           AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
                      ____________________________________________________________
consensus             AACTCCCTCCTCCCGTTGCTGCTCTCTTCCCCGGTCTTTGCCATGGCGGTTTCGCCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
JMFS041G11+           GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
rJMFF014I13-          GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
JMFN030M10+           GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
JMFN019D21+           GACGCGTTGGAGGCCCTGTCGGTGAACGCCCCACGGCGGCCGACGGTGGGAGCCTTGGCG
JMFN013P19+           GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
JMFS077F07+           GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
JMSF021I12+           GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
                      ____________________________________________________________
consensus             GACGCCTTCGAGGCCCTGACGGTGAACGCCCCACGGCGGCCGGCGGTGGGAGCCTTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS015G06+           ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCA                    
JMFS041G11+           ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGT     
rJMFF014I13-          ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
JMFN030M10+           ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
JMFN019D21+           TCGGCGGGGAGGAATGCAGGTGGCGCTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
JMFN013P19+           ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
JMFS077F07+           ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
JMSF021I12+           ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
                      ____________________________________________________________
consensus             ACGGCGGGGAGGAATGCAGGTGACACTGTCATGGATGCCATAGCCTCGGAGTTGTTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014I13-          ATCACTCTTGTGTTGTTTGTGTGTTGTG                                
JMFN030M10+           ATCACTCTTGTGTTGTTTGTGTGTTGTGGAGAAAG                         
JMFN019D21+           ATCACTCTTGTGTTGTTTGTGTGTTGTGGAGAAAGAG                       
JMFN013P19+           ATCACTCTTGTGTTGTTTGTGTGTTGTGGAGAAAGAG                       
JMFS077F07+           ATCACTCTTGTGTTGTTTGTGTGTTGTGGAGAAAGAGTTTGGGGGGAGGGGTGTT     
JMSF021I12+           ATCACTCTTGTGTTGTTTGTGTGTTGTGGAGAAAGAGTTTGGGGGGAGGGGTGTTTGGTC
                      ____________________________________________________________
consensus             ATCACTCTTGTGTTGTTTGTGTGTTGTGGAGAAAGAGTTTGGGGGGAGGGGTGTTTGGTC