Contig 011993:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008G05Sequence642011993 (7)ref|NP_001142479.1|2e-107uncharacterized protein LOC100274696 [Zea mays] gb|ACG24261.1| hypothetical prot
JMFS043F07Sequence627011993 (7)ref|NP_001142479.1|2e-109uncharacterized protein LOC100274696 [Zea mays] gb|ACG24261.1| hypothetical prot
JMFS107G02Sequence635011993 (7)gb|KDO58184.1|5e-124hypothetical protein CISIN_1g0453552mg, partial [Citrus sinensis]
JMFS118C02Sequence627011993 (7)ref|NP_001142479.1|4e-108uncharacterized protein LOC100274696 [Zea mays] gb|ACG24261.1| hypothetical prot
JMFS126A02Sequence551011993 (7)ref|NP_001142479.1|6e-102uncharacterized protein LOC100274696 [Zea mays] gb|ACG24261.1| hypothetical prot
JMSF020M12Sequence631011993 (7)ref|NP_001142479.1|3e-105uncharacterized protein LOC100274696 [Zea mays] gb|ACG24261.1| hypothetical prot737004257 (2)ref|XP_006356169.1|3e-05PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit-like [Solanum t
JMSF050A07Sequence641011993 (7)ref|NP_001142479.1|2e-115uncharacterized protein LOC100274696 [Zea mays] gb|ACG24261.1| hypothetical prot694004257 (2)

Alignment

This contig is upended


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JMFS107G02+               TCCAAGGCATCTTTGTAACCCCTCATAGTATCTGTAATTGTCAGGGTTCATAGAGA
                      ____________________________________________________________
consensus                 TCCAAGGCATCTTTGTAACCCCTCATAGTATCTGTAATTGTCAGGGTTCATAGAGA
 
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JMFS107G02+           GCAACACCTTATACAATCTTTCACCTTCTTCAAAGTGGCGAAGCTTCAGAAGAAGGCAAA
                      ____________________________________________________________
consensus             GCAACACCTTATACAATCTTTCACCTTCTTCAAAGTGGCGAAGCTTCAGAAGAAGGCAAA
 
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JMFS107G02+           CCTCTTGTTCCTTATATCCTAGTTTATCAACAATTTTATATTCTTTCTTGCGTAATTCTT
                      ____________________________________________________________
consensus             CCTCTTGTTCCTTATATCCTAGTTTATCAACAATTTTATATTCTTTCTTGCGTAATTCTT
 
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JMFS107G02+           CAAGAGCCCTCTCAAGAGATCCACATTCCTCTAACAAAGAGATCTTATATAAAAGCATTT
                      ____________________________________________________________
consensus             CAAGAGCCCTCTCAAGAGATCCACATTCCTCTAACAAAGAGATCTTATATAAAAGCATTT
 
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JMFS107G02+           CCCCATGCTCACAACGTTCATTTTCTGGAGGGTAATCATCCTCTAGAGTCCCTTCATATG
JMSF050A07+                                                     CTAGAGTCCCTTCATATG
                      ____________________________________________________________
consensus             CCCCATGCTCACAACGTTCATTTTCTGGAGGGTAATCATCCTCTAGAGTCCCTTCATATG
 
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JMFS107G02+           CCTCAAGGATATCAACAGCTTTTGATCCATTTGAGTTCAAATGATGAGCAACAGCAAAGC
JMSF050A07+           CCTCAAGGATATCAACAGCTTTTGATCCATTTGAGTTCAAATGATGAGCAACAGCAAAGC
JMFS043F07+               AAGGATATCAACAGCTTNTGATCCATTTGAGTTCAAATGATGAGCAACAGCANAGC
JMFS126A02+                                                    TGATGAGCAACAGCAAAGC
JMFS118C02+               AAGGATATCAACAGCTTNTGATCCATNTGAGTTCAAATGATGAGCAACAGCAAAGC
JMFS008G05+                  GATATCAACAGCTTNTGATCCATTTGAGTTCAAATGATGAGCAACAGCANAGC
JMSF020M12+                                          TGAGTTCAAATGATGAGCAACAGCAAAGC
                      ____________________________________________________________
consensus             CCTCAAGGATATCAACAGCTTTTGATCCATTTGAGTTCAAATGATGAGCAACAGCAAAGC
 
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JMFS107G02+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
JMSF050A07+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
JMFS043F07+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
JMFS126A02+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
JMFS118C02+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
JMFS008G05+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
JMSF020M12+           CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
                      ____________________________________________________________
consensus             CAATCCAATTCATACGGTGATTTGGCTTCAATGTCAGCAGTTGTAGTCTTGTTTCCACAA
 
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JMFS107G02+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
JMSF050A07+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
JMFS043F07+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
JMFS126A02+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
JMFS118C02+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
JMFS008G05+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
JMSF020M12+           AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
                      ____________________________________________________________
consensus             AGCCTATCAAGTCACGCATTTGTGCCTGTAAAAGAGATAAGTCACGCAATATCTCTATGT
 
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JMFS107G02+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
JMSF050A07+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
JMFS043F07+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
JMFS126A02+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
JMFS118C02+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
JMFS008G05+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
JMSF020M12+           TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
                      ____________________________________________________________
consensus             TGTCAGGATCAATTCTAAGTGCATTTCTATAGCACTTTATAGCTTCCCTGTATTCTCTAT
 
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JMFS107G02+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
JMSF050A07+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
JMFS043F07+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
JMFS126A02+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
JMFS118C02+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
JMFS008G05+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
JMSF020M12+           CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
                      ____________________________________________________________
consensus             CTGACCTGTATAGGAGACCATAAACATGCCAGCAAACATGGCTCTTAAGGTCATTCTTCA
 
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JMFS107G02+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGAC                     
JMSF050A07+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
JMFS043F07+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
JMFS126A02+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
JMFS118C02+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
JMFS008G05+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
JMSF020M12+           ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
                      ____________________________________________________________
consensus             ATCCAAGCCGAACAAGATCATATGCTTCTGACTTGCGACCCATACAATTTAATGTCAATC
 
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JMSF050A07+           CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
JMFS043F07+           CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
JMFS126A02+           CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
JMFS118C02+           CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
JMFS008G05+           CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
JMSF020M12+           CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
                      ____________________________________________________________
consensus             CTTTCATTGCCAAAGTTTCTCCATGATCAGGAAATTTCTTAAGTATAGCTTCAGCAGCTT
 
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JMSF050A07+           TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
JMFS043F07+           TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
JMFS126A02+           TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
JMFS118C02+           TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
JMFS008G05+           TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
JMSF020M12+           TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
                      ____________________________________________________________
consensus             TTAACCCTTTCTTATATTGTTTTGTCTCATATGATTTAACGATGACTTTGAAGAGGTTGG
 
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JMSF050A07+           CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
JMFS043F07+           CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
JMFS126A02+           CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
JMFS118C02+           CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
JMFS008G05+           CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
JMSF020M12+           CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
                      ____________________________________________________________
consensus             CCTCCTTAGGAGGAAGCGAAGCGCCCATTGTTGCAGAGCAGGGAGTGGTGGAGGAGAAAG
 
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JMSF050A07+           GGAAGTATAAGAGATTAGAAGAGCAGGGAGGGGTTGGGAGGGCTTTAATGGGCTGCGAGA
JMFS043F07+           GGAAGTATAAGAGATTAGAAGAGCAGGGAGGGGTTGGGAGGGCTTTAATGGGCTGCGAGA
JMFS126A02+           GGAAGTATAAGAGATTAGAAGAGCAGGGAGGGGTTGGGAGGGCTTTAATGGG        
JMFS118C02+           GGAAGTATAAGAGATTAGAAGAGCAGGGAGGGGTTGGGAGGGCTTTAATGGGCTGCGAGA
JMFS008G05+           GGAAGTATAAGAGATTAGAAGAGCAGGGAGGGGTTGGGAGGGCTTTAATGGGCTGCGAGA
JMSF020M12+           GGAAGTATAAGAGATTAGAAGAGTAGGGAGGGGTTGGGAGGGCTTTAATGGGCTGCGAGA
                      ____________________________________________________________
consensus             GGAAGTATAAGAGATTAGAAGAGCAGGGAGGGGTTGGGAGGGCTTTAATGGGCTGCGAGA
 
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JMSF050A07+           GCCGAGAGAGCAGAAAGACAGC                                      
JMFS043F07+           GCCGAGAGAGCAGAAAGACAGCGAG                                   
JMFS118C02+           GCCGAGAGAGCAGAAAGACAGCGAG                                   
JMFS008G05+           GCCGAGAGAGCAGAAAGACAGCGAGAGGAGAGGAAGTGAGGTGTTTGGC           
JMSF020M12+           GCCGAGAGAGCAGAAAGACAGCGAGAGGAGAGGAAGTGAGGTGTTTGGCGTTAATCTGCC
                      ____________________________________________________________
consensus             GCCGAGAGAGCAGAAAGACAGCGAGAGGAGAGGAAGTGAGGTGTTTGGCGTTAATCTGCC