Contig 011992:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009N17Sequence541011992 (6)681011437 (4)ref|XP_009620200.1|2e-120PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMFF027J12Sequence537011992 (6)661011437 (4)ref|XP_009620200.1|1e-118PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMFF036K07Sequence598011992 (6)521011437 (4)ref|XP_009620200.1|7e-94PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF020L15Sequence674011992 (6)783017135ref|XP_009620200.1|2e-68PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF051B11Sequence630011992 (6)783024698ref|XP_009620200.1|5e-146PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform
JMSF051D02Sequence628011992 (6)734011437 (4)ref|XP_009620200.1|9e-138PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nicotiana tomentosiform

Alignment

This contig is upended


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JMSF051B11+                                                       CCCTGGGGCAGCCCAA
JMSF051D02+                                                         CTGGGGCAGCCCAA
JMSF020L15+                                                         CTGGGGCAGCCCAA
                      ____________________________________________________________
consensus                                                         CCCTGGGGCAGCCCAA
 
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JMSF051B11+           ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
JMSF051D02+           ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
JMFF036K07+                                                                    TCT
JMSF020L15+           ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
                      ____________________________________________________________
consensus             ATGGGCAATATTGTTTGAAACTCGGATCACCGAGTCATCATTAAGAGAAGTGTCACATCT
 
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JMSF051B11+           TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
JMSF051D02+           TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
JMFF036K07+           TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
JMFF027J12+                                                                     AT
JMFF009N17+                                                                 CCACAT
JMSF020L15+           TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
                      ____________________________________________________________
consensus             TTGCGAGGAGTACTGCCTGACCACGAAGAACAATCGACGGCTTAGACCTCTGTTCCACAT
 
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JMSF051B11+           TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMSF051D02+           TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMFF036K07+           TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMFF027J12+           TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMFF009N17+           TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
JMSF020L15+           TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
                      ____________________________________________________________
consensus             TCCCAATACATGCTAGATGAATTTCCTGGCTGGAGGAATACGTAAGAGGAGCAGGCTACG
 
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JMSF051B11+           ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMSF051D02+           ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMFF036K07+           ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMFF027J12+           ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMFF009N17+           ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
JMSF020L15+           ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
                      ____________________________________________________________
consensus             ACGTGCAGGTGAGGTCGGCGACGACAACGAAGCGACTCACCGACTGCGACAGTGCGACGA
 
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JMSF051B11+           TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMSF051D02+           TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMFF036K07+           TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMFF027J12+           TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMFF009N17+           TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
JMSF020L15+           TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
                      ____________________________________________________________
consensus             TGACCGGACGGCTGTAGTGACGGCGACGACTGGACGGCTAGAAACTTTGGACGACGGGCA
 
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JMSF051B11+           ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMSF051D02+           ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMFF036K07+           ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMFF027J12+           ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMFF009N17+           ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
JMSF020L15+           ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
                      ____________________________________________________________
consensus             ACGGCGACGCTAACGTCTGTGGACTGTGTCGTGTGGCTGGAGGTTTGCGACTTTGTGTTT
 
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JMSF051B11+           GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMSF051D02+           GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMFF036K07+           GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMFF027J12+           GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMFF009N17+           GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
JMSF020L15+           GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
                      ____________________________________________________________
consensus             GAGTACTTGGGCAGATTTTATTTGAACTTGTGTACAGTGGCGGACCCAGGATTTTTCTGG
 
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JMSF051B11+           CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMSF051D02+           CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMFF036K07+           CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMFF027J12+           CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMFF009N17+           CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
JMSF020L15+           CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
                      ____________________________________________________________
consensus             CAGTTGCGACTTGTGAGTTGCGAGGCAGCGGAGTCGTCGGGTGGTGGCGCTAGTGGTGGC
 
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JMSF051B11+           GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMSF051D02+           GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMFF036K07+           GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMFF027J12+           GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMFF009N17+           GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
JMSF020L15+           GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
                      ____________________________________________________________
consensus             GTCGGAACTCAGGGAACTCACGGAGGCTGAGAGCAGACGGAACTCACGGAAGAGAAGAGG
 
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JMSF051B11+           AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMSF051D02+           AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMFF036K07+           AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMFF027J12+           AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMFF009N17+           AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
JMSF020L15+           AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
                      ____________________________________________________________
consensus             AGAGACGGTCAGACGGAACTCGGAAGACTGGAAGAGAAGAGGAGACTTGCGGTGGCGTCG
 
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JMSF051B11+           GGCTTCAGGCTTC                                               
JMSF051D02+           GGCTTCAGGCTTC                                               
JMFF036K07+           GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATT     
JMFF027J12+           GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATT     
JMFF009N17+           GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATT     
JMSF020L15+           GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATTAATTC
                      ____________________________________________________________
consensus             GGCTTCAGGCTTCAGCTCTTCTCGCATCGCAGCAGGCAATGAAACAAATGAAATTAATTC