| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024H17 | Sequence | 479 | 011989 (5) | ref|XP_009777230.1| | 4e-27 | PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Nicotiana sylv | 768 | 006860 (5) | ref|XP_006581582.1| | 3e-23 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
| JMSF001M01 | Sequence | 410 | 011989 (5) | ref|XP_009777229.1| | 6e-28 | PREDICTED: glutamic acid-rich protein-like isoform X1 [Nicotiana sylvestris] | 681 | 006860 (5) | ref|XP_006581582.1| | 7e-12 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
| JMSF002M03 | Sequence | 341 | 011989 (5) | ref|XP_009777230.1| | 4e-26 | PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Nicotiana sylv | 758 | 006860 (5) | ref|XP_006581582.1| | 1e-11 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
| JMSF020B18 | Sequence | 656 | 011989 (5) | ref|XP_009777229.1| | 1e-39 | PREDICTED: glutamic acid-rich protein-like isoform X1 [Nicotiana sylvestris] | 383 | 006860 (5) | |||
| JMSF052I03 | Sequence | 263 | 011989 (5) | ref|XP_009777230.1| | 1e-12 | PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Nicotiana sylv | 846 | 006860 (5) | ref|XP_006581582.1| | 2e-08 | PREDICTED: DNA ligase 1-like isoform X2 [Glycine max] |
This contig is upended
. : . : . : . : . : . :
JMSF020B18+ TATTGAGCNTTCACTAGCCTTTGCATCTTGAGCATCCACCAAACGAGGTTTGGACT
____________________________________________________________
consensus TATTGAGCNTTCACTAGCCTTTGCATCTTGAGCATCCACCAAACGAGGTTTGGACT
. : . : . : . : . : . :
JMSF020B18+ CCAAGACACCCATTATAGGAGAGTCATCTAATTTCTTCTCATCTTCAGCTCCAGAATCTT
____________________________________________________________
consensus CCAAGACACCCATTATAGGAGAGTCATCTAATTTCTTCTCATCTTCAGCTCCAGAATCTT
. : . : . : . : . : . :
JMFF024H17+ CACAGTCAGTTAAAC
JMSF020B18+ TTACATCTTTCTTTATCTTGTGCTCTTCAGGTGATTTTTCCACTTCACAGTCAGTTAAAC
____________________________________________________________
consensus TTACATCTTTCTTTATCTTGTGCTCTTCAGGTGATTTTTCCACTTCACAGTCAGTTAAAC
. : . : . : . : . : . :
JMFF024H17+ AAGTTTCTTTCTTCACACTNTCTTTGGAATCTTTTGTAGTGTTATTATCTTCATTGGCAC
JMSF001M01+ CACACTTTCTTGGGAATCTTTGGTAGTGTTATAATCTTCATGGGCAC
JMSF020B18+ AAGTTTCTTTCTTCACACTTTCTTTGGAATCTTTTGTAGTGTTATTATCTTCATTGGCAC
____________________________________________________________
consensus AAGTTTCTTTCTTCACACTTTCTTTGGAATCTTTTGTAGTGTTATTATCTTCATTGGCAC
. : . : . : . : . : . :
JMFF024H17+ TCTCCATACCTTCTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATACTTT
JMSF001M01+ TCTCCATACCTTCTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATACTTT
JMSF002M03+ AATCTNTTGTAGTATAATCTTCATNGGCACTCTCCATACTTT
JMSF020B18+ TCTCCATACCTTCTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATACTTT
____________________________________________________________
consensus TCTCCATACCTTCTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATACTTT
. : . : . : . : . : . :
JMFF024H17+ CTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATATGCTCCTCTAGGAACT
JMSF001M01+ CTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATATGCTCCTCTAGGAACT
JMSF002M03+ CTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATATGCTCCTCTAGGAACT
JMSF020B18+ CTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATATGCTCCTCTAGGAACT
____________________________________________________________
consensus CTTTGGAATCTTTTGTAGTATTATCTTCATTGGCACTCTCCATATGCTCCTCTAGGAACT
. : . : . : . : . : . :
JMSF052I03+ GAATCTTTTATGTATATATATGGCATACTNGTCAATGTCCAAGTCTTTCTCGA
JMFF024H17+ GCTTAATGAATCTTTTATGTATATNTATGGCATACTTGTCAATGTCCAAGTCTTTCTCGA
JMSF001M01+ GCTTAATGAATCTTTTATGTATATCTATGGCATACTTGTCAATGTCCAAGTCTTTCTCGA
JMSF002M03+ GCTTAATGAATCTNTTATGTATATCTATGGCATACTTGTCAATGTCCAAGTCTTTCTCGA
JMSF020B18+ GCTTAATGAATCTTTTATGTATATCTATGGCATACTTGTCAATGTCCAAGTCTTTCTCGA
____________________________________________________________
consensus GCTTAATGAATCTTTTATGTATATCTATGGCATACTTGTCAATGTCCAAGTCTTTCTCGA
. : . : . : . : . : . :
JMSF052I03+ TNAACCTACGAACTCTTTCCAACGNGAAGGAGTNGGCATTNTCCTTTAAGTGTTNGAGGC
JMFF024H17+ TTAACCTACGAACTCTTTCCAACGTGAAGGAGTTGGCATTCTCCTTTAAGTGTTCGAGGC
JMSF001M01+ TTAACCTACGAACTCTTTCCAACGTGAAGGAGTNGGCATTCTCCTTTAAGTGTTCGAGGC
JMSF002M03+ TTAACCTACGAACTCTTTCCAACGTGAAGGAGTTGGCATTCTCCTTTAAGTGTTCGAGGN
JMSF020B18+ TTAACCTACGAACTCTTTCCAACGTGAAGGAGTNGGCATTCTCCTTTAAGTGTTCGAGGC
____________________________________________________________
consensus TTAACCTACGAACTCTTTCCAACGTGAAGGAGTTGGCATTCTCCTTTAAGTGTTCGAGGC
. : . : . : . : . : . :
JMSF052I03+ GAGAGCGCAGTGCAGCCTCTATNTGAGACTCGTCAATCCCCTTCTTCAGCTCCTGTTTCA
JMFF024H17+ GAGAGCGCAGTGCAGCCTCTATCTGAGACTCGTCAATCCCCTTCTTCAGCTCCTGTTTCA
JMSF001M01+ GAGAGCGCAGTGCAGCCTCTATCTGAGACTCGTCAATCCCCTTCTTCAGCTCCTGTTTCA
JMSF002M03+ GAGAGCGCAGTGCAGCCTCTATATGAGACTCGTCAATCCCCTTNTTCAGCTCCTGTTTCA
JMSF020B18+ GAGAGCGCAGTGCAGCCTCTATCTGAGACTCGTCAATCCCCTTCTTCAGCTCCTGTTTCA
____________________________________________________________
consensus GAGAGCGCAGTGCAGCCTCTATCTGAGACTCGTCAATCCCCTTCTTCAGCTCCTGTTTCA
. : . : . : . : . : . :
JMSF052I03+ CGTCCTCCTCCACCATNTCCGTGTTCATTACCCTACTCTCTCTCTCTCTCTCTCTCTCGG
JMFF024H17+ CGTCCTCCTCCACCATCTCCGTCTTCATTACCCTACTCTCTCTCTCTCTCTCTCTCTCGG
JMSF001M01+ CGTCCTCCTCCACCATCTCCGTCTTCATTACCCTACTCTCTCTCTCTCTCTCTCTCTC
JMSF002M03+ CGTCCTCCTCCACCATCTCCGTNTTCATTACCCTACTCTCTCTCTCTCTCTCTCTCTC
JMSF020B18+ CGTCCTCCTCCACCATCTCCGTNTTCATTACCCTACTCTCTCTCTCTCTCTCTCTCTCGG
____________________________________________________________
consensus CGTCCTCCTCCACCATCTCCGTCTTCATTACCCTACTCTCTCTCTCTCTCTCTCTCTCGG
. : . : . : . : . : . :
JMSF052I03+ CAATACCTCAATTCAATTGCAGCTT
JMFF024H17+ CAATACCTCAATTCAATTGCAGCTTATGGGCTTTTTCCGGTAGC
JMSF020B18+ CAATACCTCAATTCAATTGCAGCTTATGGGCTTTTTCCGGTAGCAAATGACATAGAGTCC
____________________________________________________________
consensus CAATACCTCAATTCAATTGCAGCTTATGGGCTTTTTCCGGTAGCAAATGACATAGAGTCC