| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF036J16 | Sequence | 546 | 011988 (4) | ref|XP_009594336.1| | 1e-92 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 723 | 006792 (11) | ref|XP_009631700.1| | 1e-89 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMFF040O18 | Sequence | 549 | 011988 (4) | ref|XP_009594336.1| | 1e-92 | PREDICTED: squalene synthase-like [Nicotiana tomentosiformis] | 797 | 006792 (11) | ref|XP_009631700.1| | 3e-110 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMSF020A01 | Sequence | 696 | 011988 (4) | gb|AAD20626.1| | 4e-111 | squalene synthase [Capsicum annuum] | 791 | 006792 (11) | ref|XP_009631700.1| | 4e-102 | PREDICTED: squalene synthase [Nicotiana tomentosiformis] |
| JMSF036N16 | Sequence | 609 | 011988 (4) | gb|AAD20626.1| | 4e-113 | squalene synthase [Capsicum annuum] | 595 | 011358 (4) | gb|ABV89583.1| | 2e-91 | plastid 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Rauvolfia vertici |
This contig is upended
. : . : . : . : . : . :
JMSF036N16+ TAATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCA
JMSF020A01+ AAGCCCAGCAACATAATGACAATATTCATCATAATCA
____________________________________________________________
consensus TAATCCAACAAGCCCAGCAACATAATGACAATATTCATCATAATCA
. : . : . : . : . : . :
JMSF036N16+ TCAATTGTTTCGACCTCCTTGCATATAAACTTTGCCAT-CCCTGCACCCATCCTCATGGT
JMFF036J16+ TTGCATATAAACTTTGCCATCCCCTGCACCCATCCTCATGGT
JMFF040O18+ TCCTTGCATATAAACTTTGCCATCCCCTGCACCCATCCTCATGGT
JMSF020A01+ TCAATTGTTTCGACCTCCTTGCATATAAACTTTGCCAT-CCCTGCACCCATCCTCATGGT
____________________________________________________________
consensus TCAATTGTTTCGACCTCCTTGCATATAAACTTTGCCATCCCCTGCACCCATCCTCATGGT
. : . : . : . : . : . :
JMSF036N16+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
JMFF036J16+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
JMFF040O18+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
JMSF020A01+ AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
____________________________________________________________
consensus AATATCCTCAATTGCTTCCTGATAATTTTTCCCAAGTTCCAGAAAAGCAGTAGAAACATG
. : . : . : . : . : . :
JMSF036N16+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
JMFF036J16+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
JMFF040O18+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
JMSF020A01+ ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
____________________________________________________________
consensus ATGGAACTGGTCCATGAGAACTTTATAGTCCTTTGTTCCACACAGGAAATGCCATTCACG
. : . : . : . : . : . :
JMSF036N16+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
JMFF036J16+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
JMFF040O18+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
JMSF020A01+ GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
____________________________________________________________
consensus GTCATATATGTGACGATGAAAATCTATCAGAATAGGTACTTTAACTTCTGTGGCTATGCT
. : . : . : . : . : . :
JMSF036N16+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
JMFF036J16+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
JMFF040O18+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
JMSF020A01+ TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
____________________________________________________________
consensus TGTATCATCCTCAACAGTGTCAAGTGCTCGAAGAACCAAATAGAAAATACACACGGCGTC
. : . : . : . : . : . :
JMSF036N16+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
JMFF036J16+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
JMFF040O18+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
JMSF020A01+ GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
____________________________________________________________
consensus GCGAAGCTCGATAGGGAGCTGCTGGATAACGAGAGCGAAGCTTCGAGAGACCTTCTGGAG
. : . : . : . : . : . :
JMSF036N16+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGNTTCTCGATCTGCCTCGC
JMFF036J16+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
JMFF040O18+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
JMSF020A01+ CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
____________________________________________________________
consensus CATGGTGTAGCAGAATCCCCAGTGAGGCTGCGGCGGGATCTGCTTCTCGATCTGCCTCGC
. : . : . : . : . : . :
JMSF036N16+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
JMFF036J16+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
JMFF040O18+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
JMSF020A01+ CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
____________________________________________________________
consensus CGCAATCTTCAGCTTAATCAGCGGGTACACGTCGTCCGGATGCTTCAACATCGCTCCCAA
. : . : . : . : . : . :
JMSF036N16+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
JMFF036J16+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
JMFF040O18+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
JMSF020A01+ ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
____________________________________________________________
consensus ACTCCCCATTTTTCACACTATTTCAGTATTCCTAACCAGTACACAGTTTCCAATCTATCA
. : . : . : . : . : . :
JMSF036N16+ CCGATCCAATTTAAAGATCCTTT
JMFF036J16+ CCGATCCAATTTAAAGATCCTTT
JMFF040O18+ CCGATCCAATTTAAAGATCCTTT
JMSF020A01+ CCGATCCAATTTAAAGATCCTTTCGAAGCGTACATTCATACAACAGAGAGAGATATAGAG
____________________________________________________________
consensus CCGATCCAATTTAAAGATCCTTTCGAAGCGTACATTCATACAACAGAGAGAGATATAGAG
. : . : . : . : . : . :
JMSF020A01+ AGTTTCGAAATTCTGGATGTACCTGTGTGTGTTCTGTAATGCAAAGCCTGTGAGCTTTTC
____________________________________________________________
consensus AGTTTCGAAATTCTGGATGTACCTGTGTGTGTTCTGTAATGCAAAGCCTGTGAGCTTTTC