| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF015D04 | Sequence | 345 | 011987 (3) | ref|XP_009766049.1| | 1e-20 | PREDICTED: uncharacterized protein LOC104217480 isoform X2 [Nicotiana sylvestri | 767 | 011306 (3) | ref|XP_009766049.1| | 2e-54 | PREDICTED: uncharacterized protein LOC104217480 isoform X2 [Nicotiana sylvestri |
| JMSF019O07 | Sequence | 416 | 011987 (3) | ref|XP_009617938.1| | 133 | PREDICTED: uncharacterized protein LOC104110193 [Nicotiana tomentosiformis] | 773 | 011306 (3) | ref|XP_004233343.1| | 261 | PREDICTED: uncharacterized protein LOC101262377 [Solanum lycopersicum] |
| JMSF019P19 | Sequence | 247 | 011987 (3) | ref|XP_009766048.1| | 9e-06 | PREDICTED: uncharacterized protein LOC104217480 isoform X1 [Nicotiana sylvestri | 723 | 011306 (3) | gb|KJB11419.1| | 1e-15 | hypothetical protein B456_001G257900 [Gossypium raimondii] gb|KJB11421.1| hypoth |
This contig is upended
. : . : . : . : . : . :
JMSF019O07+ GACCTGAAGCAACCTATGCGTCTCCCGGGGAGGCTTGGTTTCTTCAGGAACAACAGCC
____________________________________________________________
consensus GACCTGAAGCAACCTATGCGTCTCCCGGGGAGGCTTGGTTTCTTCAGGAACAACAGCC
. : . : . : . : . : . :
JMSF019O07+ TTGCCCCTTCTGTTCTTCGCCTGCTCTTTTCTCCTCTTTGGCTTTGGAGAAGGGTCGGAC
JMSF015D04+ CTTTGGAGAAGGGTCGGAC
____________________________________________________________
consensus TTGCCCCTTCTGTTCTTCGCCTGCTCTTTTCTCCTCTTTGGCTTTGGAGAAGGGTCGGAC
. : . : . : . : . : . :
JMSF019O07+ ATAAACTCGTCTAGATCGAGACCATATTGTTCGAGCAGCTGCCTTTTCTGGTCAAGTGGA
JMSF015D04+ ATAAACTCGTCTAGATCGAGACCATATTGTTCGAGCAGCTGCCTTTTCTGGTCAAGTGGA
JMSF019P19+ AAGTGGA
____________________________________________________________
consensus ATAAACTCGTCTAGATCGAGACCATATTGTTCGAGCAGCTGCCTTTTCTGGTCAAGTGGA
. : . : . : . : . : . :
JMSF019O07+ AGTTCATTGTTGGATTTGTAAGAGAAGGTTATAACGAACGGGCGGCGGGGATAAGTGCCT
JMSF015D04+ AGTTCATTGTTGGATTTGTAAGAGAAGGTTATAACGAACGGGCGGCGGGGATAAGTGCCT
JMSF019P19+ AGTTCATTGTTGGATTTGTAAGAGAAGGTTATAACGAACGGGCGGCGGGGATAAGTGCCT
____________________________________________________________
consensus AGTTCATTGTTGGATTTGTAAGAGAAGGTTATAACGAACGGGCGGCGGGGATAAGTGCCT
. : . : . : . : . : . :
JMSF019O07+ CTGGAAACATAGCCGATTGAAGCCGGATTGGAGAAACGCGAAACGGGGTCGTTAATGGCG
JMSF015D04+ CTGGAAACATAGCCGATTGAAGCCGGATTGGGGAAACGCGAAACGGGGTCGTTAATGGCG
JMSF019P19+ CTGGAAACATAGCCGATTGAAGCCGGATTGGAGAAACGCGAAACGGGGTCGTTAATGGCG
____________________________________________________________
consensus CTGGAAACATAGCCGATTGAAGCCGGATTGGAGAAACGCGAAACGGGGTCGTTAATGGCG
. : . : . : . : . : . :
JMSF019O07+ GGGCGGTTTCGGGCGCGCAGTGTAGAAATAACCGCAGAAATGCTATGAGTTGATGAAACC
JMSF015D04+ GGGCGGTTTCGGGCGCGCAGTGTAGAAATAACCGCAGAAATGCTATGAGTTGATGAAACC
JMSF019P19+ GGGCGGTTTCGGGCGCGCAGTGTAGAAATAACCGCAGAAATGCTATGAGTTGATGAAACC
____________________________________________________________
consensus GGGCGGTTTCGGGCGCGCAGTGTAGAAATAACCGCAGAAATGCTATGAGTTGATGAAACC
. : . : . : . : . : . :
JMSF019O07+ GCCATTACTGGCGCCCAAAGCTACAGATAGCACAGCCGGAGCAAGAAGGTTCCGC
JMSF015D04+ GCCATTACTGGCGCCCAAAGCTACAGATAGCACAGCCGGAGCAAGAAGGTTCCGC
JMSF019P19+ GCCATTACTGGCGCCCAAAGCTACAGATAGCACAGCCGGAGCAAGAAGGTTCCGCGCGCC
____________________________________________________________
consensus GCCATTACTGGCGCCCAAAGCTACAGATAGCACAGCCGGAGCAAGAAGGTTCCGCGCGCC