| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS057D01 | Sequence | 626 | 011985 (3) | ref|XP_009630998.1| | 9e-89 | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like iso | |||||
| JMSF019K05 | Sequence | 543 | 011985 (3) | ref|XP_009630998.1| | 6e-66 | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like iso | 785 | 003006 (2) | ref|XP_009629297.1| | 3e-100 | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Nicotia |
| JMSF049D13 | Sequence | 732 | 011985 (3) | ref|XP_003633408.1| | 5e-112 | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I isoform | 780 | 003006 (2) | ref|XP_009629297.1| | 1e-83 | PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Nicotia |
This contig is upended
. : . : . : . : . : . :
JMSF049D13+ CTGACCATAAACATGGCAGCACCAAGAACATGACC
____________________________________________________________
consensus CTGACCATAAACATGGCAGCACCAAGAACATGACC
. : . : . : . : . : . :
JMSF049D13+ AGCAGTATAGCACCAGAAGCGGATACCATTAACTTCCATTGTCTGATGGAAGTCAATAAC
____________________________________________________________
consensus AGCAGTATAGCACCAGAAGCGGATACCATTAACTTCCATTGTCTGATGGAAGTCAATAAC
. : . : . : . : . : . :
JMSF049D13+ CTCAATTTTTTCCATGGATTTATTGATGTCTTTTTCATCAAATAGCATATCTTCAACAGA
JMFS057D01+ TTATTGATGTCTTTTTCATCAAATAGCATATCTTCAACAGA
____________________________________________________________
consensus CTCAATTTTTTCCATGGATTTATTGATGTCTTTTTCATCAAATAGCATATCTTCAACAGA
. : . : . : . : . : . :
JMSF049D13+ GACCTTGCTTACTTTAACAAAATCCGATAATAACAATTTATAAATCGCCTTTGTTGCATG
JMFS057D01+ GACCTTGCTTACTTTAACAAAATCCGATAATAACAATTTATAAATCGCCTTTGTTGCATG
JMSF019K05+ ATG
____________________________________________________________
consensus GACCTTGCTTACTTTAACAAAATCCGATAATAACAATTTATAAATCGCCTTTGTTGCATG
. : . : . : . : . : . :
JMSF049D13+ GGTCATGAAAACTCGTCCTTTGAATGTGGTCTTTTCTAGAAAATATGGGAGGGAAGCAGC
JMFS057D01+ GGTCATGAAAACTCGTCCTTTGAATGTGGTCTTTTCTAGAAAATATGGGAGGGAAGCAGC
JMSF019K05+ GGTCATGAAAACTCGTCCTTTGAATGTGGTCTTTTCTAGAAAATATGGGAGGGAAGCAGC
____________________________________________________________
consensus GGTCATGAAAACTCGTCCTTTGAATGTGGTCTTTTCTAGAAAATATGGGAGGGAAGCAGC
. : . : . : . : . : . :
JMSF049D13+ ATGATCCAAGTGAAAATGGGTAATTAGAAGAACATCAATAGTTGAAGGATCAATTTCATC
JMFS057D01+ ATGATCCAAGTGAAAATGGGTAATTAGAAGAACATCAATAGTTGAAGGATCAATTTCATC
JMSF019K05+ ATGATCCAAGTGAAAATGGGTAATTAGAAGAACATCAATAGTTGAAGGATCAATTTCATC
____________________________________________________________
consensus ATGATCCAAGTGAAAATGGGTAATTAGAAGAACATCAATAGTTGAAGGATCAATTTCATC
. : . : . : . : . : . :
JMSF049D13+ AAAGTATGGCAAAGCAGCCATGCCAGAGTAAGCTGGATGAATCCCACAATCAAACAAAAC
JMFS057D01+ AAAGTATGGCAAAGCAGCCATGCCAGAGTAAGCTGGATGAATCCCACAATCAAACAAAAC
JMSF019K05+ AAAGTATGGCAAAGCAGCCATGCCAGAGTAAGCTGGATGAATCCCACAATCAAACAAAAC
____________________________________________________________
consensus AAAGTATGGCAAAGCAGCCATGCCAGAGTAAGCTGGATGAATCCCACAATCAAACAAAAC
. : . : . : . : . : . :
JMSF049D13+ TGTTTTCCCTTTGTAAGACATGTAAACACACGACCGCCCCACTTCGCTTCCAGCCCCTAA
JMFS057D01+ TGTTTTCCCTTTGTAAGACATGTAAACACACGACCGCCCCACTTCGCTTCCAGCCCCTAA
JMSF019K05+ TGTTTTCCCTTTGTAAGACATGTAAACACACGACCGCCCCACTTCGCTTCCAACCCCTAA
____________________________________________________________
consensus TGTTTTCCCTTTGTAAGACATGTAAACACACGACCGCCCCACTTCGCTTCCAGCCCCTAA
. : . : . : . : . : . :
JMSF049D13+ AGGAGTAATGATCAGCCGATCTGCTTCTCTTGTTATTGCTGAATTAGGTCTCTTTGACAT
JMFS057D01+ AGGAGTAATGATCAGCCGATCTGCTTCTCTTGTTATTGCTGAATTAGGTCTCTTTGACAT
JMSF019K05+ AGGAGTAATGATCAGCCGATCTGCTTCTCTTGTTATTGCTGAATTAGGTCTCTTTGACAT
____________________________________________________________
consensus AGGAGTAATGATCAGCCGATCTGCTTCTCTTGTTATTGCTGAATTAGGTCTCTTTGACAT
. : . : . : . : . : . :
JMSF049D13+ TGATTGTGGCTGTCCAGTAGATGCCATTTCTCCACGTCCTCAAAAACCACAGTAATTATG
JMFS057D01+ TGATTGTGGCTGTCCAGTAGATGCCATTTCTCCACGTCCTCAAAAACCACAGTAATTATG
JMSF019K05+ TGATTGTGGCTGTCCAGTAGATACCATTTCTCCACGTCCTCAAAAACCACAGTAATTATG
____________________________________________________________
consensus TGATTGTGGCTGTCCAGTAGATGCCATTTCTCCACGTCCTCAAAAACCACAGTAATTATG
. : . : . : . : . : . :
JMSF049D13+ ATGAGTTTTTCCTTTGGACGAAATCGTAAGGATATCGAGCTGGAACCTCTCCCCGATTCG
JMFS057D01+ ATGAGTTTTTCCTTTGGACGAAATCGTAAGGATATCGAGCTGGAACCTCTCCCCGATTCG
JMSF019K05+ ATGAGTTTTTCCTTTGGACGAAATCGTAAGGATATCGAGCTGGAACCTCTCCCCGATTCG
____________________________________________________________
consensus ATGAGTTTTTCCTTTGGACGAAATCGTAAGGATATCGAGCTGGAACCTCTCCCCGATTCG
. : . : . : . : . : . :
JMSF049D13+ GTGATGGAAGGAGCTTACTTACAGCGCGCGATAAGCTTGGAGAGAGAGAGAGAGACAGGG
JMFS057D01+ GTGATGGAAGGAGCTTACTTACAGCGCGCGATAAGCTTGGAGAGAGAGAGAGAGACAGGG
JMSF019K05+ GTGATGGAAGGAGCTTACTTACAGCGCGCGATAAGCTTGGAGAGAGAGAGAGAGACAGGG
____________________________________________________________
consensus GTGATGGAAGGAGCTTACTTACAGCGCGCGATAAGCTTGGAGAGAGAGAGAGAGACAGGG
. : . : . : . : . : . :
JMSF049D13+ AGTGAGAGTAGAAACCCTAGCCTTGAAATGTT
JMFS057D01+ AGTGAGAGTAGAAACCCTAGCCTTGAAATGTTTCCCGCTGGTTGT
JMSF019K05+ AGTGAGAGTAGAAACCCTAGCCTTGAAATGTTTCCCGCTGGTTGTTAGTTTTGGTCTTCC
____________________________________________________________
consensus AGTGAGAGTAGAAACCCTAGCCTTGAAATGTTTCCCGCTGGTTGTTAGTTTTGGTCTTCC