Contig 011983:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP010B12Sequence288011983 (5)ref|XP_006476869.1|6e-59PREDICTED: 60S ribosomal protein L27a-3-like [Citrus sinensis]
JMFN011P06Sequence624011983 (5)ref|XP_004293723.1|3e-93PREDICTED: 60S ribosomal protein L27a-2-like [Fragaria vesca subsp. vesca]
JMFN038P10Sequence584011983 (5)ref|XP_010102488.1|2e-93hypothetical protein L484_014543 [Morus notabilis] ref|XP_010113107.1| hypotheti
JMSF019G11Sequence446011983 (5)ref|XP_008438796.1|1e-83PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo]568011983 (5)ref|XP_010102488.1|1e-93hypothetical protein L484_014543 [Morus notabilis] ref|XP_010113107.1| hypotheti

Alignment

This contig is upended


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JMFN038P10+                                                                     AG
JMFN011P06+                             AATCATTAATATTTTTAAAGGAAATAAGCATATATTATATAG
                      ____________________________________________________________
consensus                               AATCATTAATATTTTTAAAGGAAATAAGCATATATTATATAG
 
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JMFN038P10+           AGCTGCAAAATTGAATTCCACATATAATGAAAACAAACCGCAAGTTCATATCATAAATGT
rJMSF019G11-                                             AACCGCAAGTTCATATCATAAATGT
JMFN011P06+           AGCTGCAAAATTGAATTCCACATATAATGAAAACAAACCGCAAGTTCATATCATAAATGT
                      ____________________________________________________________
consensus             AGCTGCAAAATTGAATTCCACATATAATGAAAACAAACCGCAAGTTCATATCATAAATGT
 
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JMFN038P10+           TAAGATTCCAAAACCGCAAAATGTGAGACGGAGAGTGAAAGAAGAACCTTAGGCGGTGAG
rJMSF019G11-          TAAGATTCCAAAACCGCAAAATGTGAGACGGAGAGTGAAAGAAGAACCTTAGGCGGTGAG
JMFN011P06+           TAAGATTCCAAAACCGCAAAATGTGAGACGGAGAGTGAAAGAAGAACCTTAGGCGGTGAG
                      ____________________________________________________________
consensus             TAAGATTCCAAAACCGCAAAATGTGAGACGGAGAGTGAAAGAAGAACCTTAGGCGGTGAG
 
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JMFN038P10+           AAGAACAGCGCCGCCGGCCTCCTTGATCTTCTTCTCGGCGATCTTCGAAACGAGCTTAGC
rJMSF019G11-          AAGAACAGCGCCGCCGGCCTCCTTGATCTTCTTCTCGGCGATCTTCGAAACGAGCTTAGC
JMFN011P06+           AAGAACAGCGCCGCCGGCCTCCTTGATCTTCTTCTCGGCGATCTTCGAAACGAGCTTAGC
JMSF019G11+                                             TCGGCGATCTTCGAAACGAGCTTAGC
                      ____________________________________________________________
consensus             AAGAACAGCGCCGCCGGCCTCCTTGATCTTCTTCTCGGCGATCTTCGAAACGAGCTTAGC
 
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JMFN038P10+           CTTTACCACAACCGGCTGATTGCTAGGAAGCACGCCCTTCCCGAGAACCTTGAAAAACCC
rJMSF019G11-          CTTTACCACAACCGGCTGATTGCTAGGAAGCACGCCCTTCCCGAGAACCTTGAAAAACCC
rJMCP010B12+                                                  CCGAGAACCTTGAAAAACCC
JMFN011P06+           CTTTACCACAACCGGCTGATTGCTAGGAAGCACGCCCTTCCCGAGAACCTTGAAAAACCC
JMSF019G11+           CTTTACCACAACCGGCTGATTGCTAGGAAGCACGCCCTTCCCGAGAACCTTGAAAAACCC
                      ____________________________________________________________
consensus             CTTTACCACAACCGGCTGATTGCTAGGAAGCACGCCCTTCCCGAGAACCTTGAAAAACCC
 
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JMFN038P10+           TAACTGAGTCACATCGATCAAGGGAACGTCGTCCTTGGAGGCCTTGGCCTTCACTTCCGG
rJMSF019G11-          TAACTGAGTCACATCGATCAAGGGAACGTCGTCCTTGGAGGCCTTGGCCTTCACTTCCGG
rJMCP010B12+          TAACTGAGTCACATCGATCAAGGGAACGTCGTCCTTGGAGGCCTTGGCCTTCACTTCCGG
JMFN011P06+           TAACTGAGTCACATCGATCAAGGGAACGTCGTCCTTGGAGGCCTTGGCCTTCACTTCCGG
JMSF019G11+           TAACTGAGTCACATCGATCAAGGGAACGTCGTCCTTGGAGGCCTTGGCCTTCACTTCCGG
                      ____________________________________________________________
consensus             TAACTGAGTCACATCGATCAAGGGAACGTCGTCCTTGGAGGCCTTGGCCTTCACTTCCGG
 
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JMFN038P10+           CGGCACCATTGACCAGAGCTTGTCGACGTTGACGATGGGGCAGTAGAACTTGTTGCGGAG
rJMSF019G11-          CGGCACCATTGACCAGAGCTTGTCGACGTTGACGATGGGGCAGTAGAACTTGTTGCGGAG
rJMCP010B12+          CGGCACCATTGACCAAAGCTTGTCGACGTTGACGATGGGGCAGTAGAACTTGTTGCGGAG
JMFN011P06+           CGGCACCATTGACCAGAGCTTGTCGACGTTGACGATGGGGCAGTAGAACTTGTTGCGGAG
JMSF019G11+           CGGCACCATTGACCAGAGCTTGTCGACGTTGACGATGGGGCAGTAGAACTTGTTGCGGAG
                      ____________________________________________________________
consensus             CGGCACCATTGACCAGAGCTTGTCGACGTTGACGATGGGGCAGTAGAACTTGTTGCGGAG
 
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JMFN038P10+           CTTGTGGAAGTACCGCATCCCGACTTTCCCGAAATACCCCGGGTGATACTTGTCGAAGAG
rJMSF019G11-          CTTGTGGAAGTACCGCATCCCGACTTTCCCGAAATACCCCGGGTGATACTTGTCGAAGAG
rJMCP010B12+          CTTGTGGAAGTACCGCATCCCGACTTTCCCGAAATACCCCGGGTGATACTTGTCGAAGAG
JMFN011P06+           CTTGTGGAAGTACCGCATCCCGACTTTCCCGAAATACCCCGGGTGATACTTGTCGAAGAG
JMSF019G11+           CTTGTGGAAGTACCGCATCCCGACTTTCCCGAAATACCCCGGGTGATACTTGTCGAAGAG
                      ____________________________________________________________
consensus             CTTGTGGAAGTACCGCATCCCGACTTTCCCGAAATACCCCGGGTGATACTTGTCGAAGAG
 
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JMFN038P10+           GATCCGGTGGTGGTGCATCCCTCCGGCGTTCCCGCGGCCTCCCGGGTGCTTCCGGTGCTT
rJMSF019G11-          GATCCGGTGGTGGTGCATCCCTCCGGCGTTCCCGCGGCCTCCCGGGTGCTTCCGGTGCTT
rJMCP010B12+          GATCCGGTGGTGGTGCATCCCTCCGGCGTTCCCGCGGCCTCCCGGGTGCTTCCGGTGCTT
JMFN011P06+           GATCCGGTGGTGGTGCATCCCTCCGGCGTTCCCGCGGCCTCCCGGGTGCTTCCGGTGCTT
JMSF019G11+           GATCCGGTGGTGGTGCATCCCTCCGGCGTTCCCGCGGCCTCCCGGGTGCTTCCGGTGCTT
                      ____________________________________________________________
consensus             GATCCGGTGGTGGTGCATCCCTCCGGCGTTCCCGCGGCCTCCCGGGTGCTTCCGGTGCTT
 
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JMFN038P10+           CCCGATGCGCCCGTGCCCGGCGCTCACGTGGCCTCTCTTCTTCCTATTCTTCTTGAACCT
rJMSF019G11-          CCCGATGCGCCCGTGCCCGGCGCTCACGTGGCCTCTCTTCTTCCTGTTCTTCTT      
rJMCP010B12+          CCCGATGCGCCCGTGCCCGGCGCTCACG                                
JMFN011P06+           CCCGATGCGCCCGTGCCCGGCGCTCACGTGGCCTCTCTTCTTCCTGTTCTTCTTGAACCT
JMSF019G11+           CCCGATGCGCCCGTGCCCGGCGCTCACGTGGCCTCTCTTCTTCCTGTTCTTCTTGAACCT
                      ____________________________________________________________
consensus             CCCGATGCGCCCGTGCCCGGCGCTCACGTGGCCTCTCTTCTTCCTGTTCTTCTTGAACCT
 
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JMFN038P10+           TGTCGTCATGGTTGCCGGAGATTATTGCAGAGCGGCGGCTGA                  
JMFN011P06+           TGTCGTCATGGTTGCCGGAGATTATTGCAGAGCGGCGGCTGA                  
JMSF019G11+           TGTCGTCATGGTTGCCGGAGATTATTGCAGAGCGGCGGCTGAGCACTGACCCTAATACTC
                      ____________________________________________________________
consensus             TGTCGTCATGGTTGCCGGAGATTATTGCAGAGCGGCGGCTGAGCACTGACCCTAATACTC