Contig 011981:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020A09Sequence626011981 (4)ref|XP_006339845.1|8e-42PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [
JMSF018L17Sequence513011981 (4)804001501 (4)ref|XP_004231883.1|1e-39PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF037L07Sequence678011981 (4)ref|XP_006339845.1|9e-46PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [731012692 (2)gb|EYU44446.1|3e-68hypothetical protein MIMGU_mgv1a001251mg [Erythranthe guttata]
JMSF051B18Sequence681011981 (4)ref|XP_006339845.1|7e-47PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [734001501 (4)ref|XP_004231883.1|2e-38PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF037L07+ CAAATTAAACATTGCCAAA
JMFS020A09+ TTGCCAAA
JMSF051B18+ ATGAGACAAATTAAACATTGCCAAA
                      ____________________________________________________________
consensus ATGAGACAAATTAAACATTGCCAAA
 
. : . : . : . : . : . :
JMSF037L07+ AGCAAGCCACCTTCCAATGGATTCCCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
JMFS020A09+ AGCAAGCCACCTTCCAATGGATTCNCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
JMSF051B18+ AGCAAGCCACCTTCCAATGGATTCCCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
                      ____________________________________________________________
consensus AGCAAGCCACCTTCCAATGGATTCCCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
 
. : . : . : . : . : . :
JMSF037L07+ AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
JMFS020A09+ AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
JMSF051B18+ AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
                      ____________________________________________________________
consensus AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
 
. : . : . : . : . : . :
JMSF037L07+ ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
JMFS020A09+ ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
JMSF051B18+ ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
                      ____________________________________________________________
consensus ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
 
. : . : . : . : . : . :
JMSF037L07+ TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
JMFS020A09+ TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
JMSF051B18+ TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
                      ____________________________________________________________
consensus TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
 
. : . : . : . : . : . :
JMSF037L07+ AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
JMFS020A09+ AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
JMSF051B18+ AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
JMSF018L17+ GCCAGTTGACTCCACCTGATCATGTCCGCAAAG
                      ____________________________________________________________
consensus AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
 
. : . : . : . : . : . :
JMSF037L07+ TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
JMFS020A09+ TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
JMSF051B18+ TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
JMSF018L17+ TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
                      ____________________________________________________________
consensus TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
 
. : . : . : . : . : . :
JMSF037L07+ TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
JMFS020A09+ TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
JMSF051B18+ TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
JMSF018L17+ TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
                      ____________________________________________________________
consensus TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
 
. : . : . : . : . : . :
JMSF037L07+ TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
JMFS020A09+ TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
JMSF051B18+ TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
JMSF018L17+ TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
                      ____________________________________________________________
consensus TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
 
. : . : . : . : . : . :
JMSF037L07+ TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
JMFS020A09+ TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
JMSF051B18+ TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
JMSF018L17+ TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
                      ____________________________________________________________
consensus TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
 
. : . : . : . : . : . :
JMSF037L07+ GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
JMFS020A09+ GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
JMSF051B18+ GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
JMSF018L17+ GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
                      ____________________________________________________________
consensus GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
 
. : . : . : . : . : . :
JMSF037L07+ GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAAC
JMFS020A09+ GAGAAGATGGCTTGAGCC
JMSF051B18+ GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAAC
JMSF018L17+ GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAACGTTTT
                      ____________________________________________________________
consensus GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAACGTTTT
 
. : . : . : . : . : . :
JMSF018L17+ ATTATTTGAGGAAGAAGACTTAATAAGTGTGTGCAACAACCCGCTGCCATTGGTGTGGTT
                      ____________________________________________________________
consensus ATTATTTGAGGAAGAAGACTTAATAAGTGTGTGCAACAACCCGCTGCCATTGGTGTGGTT
 
. : . : . : . : . : . :
JMSF018L17+ GGTTGGTGTGGACATAGTTGTACCATCCGCTCCACATCGTGTGCTCACTACTTAGACCCC
                      ____________________________________________________________
consensus GGTTGGTGTGGACATAGTTGTACCATCCGCTCCACATCGTGTGCTCACTACTTAGACCCC