Contig 011981:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020A09Sequence626011981 (4)ref|XP_006339845.1|8e-42PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [
JMSF018L17Sequence513011981 (4)804001501 (4)ref|XP_004231883.1|1e-39PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan
JMSF037L07Sequence678011981 (4)ref|XP_006339845.1|9e-46PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [731012692 (2)gb|EYU44446.1|3e-68hypothetical protein MIMGU_mgv1a001251mg [Erythranthe guttata]
JMSF051B18Sequence681011981 (4)ref|XP_006339845.1|7e-47PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic-like [734001501 (4)ref|XP_004231883.1|2e-38PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan

Alignment

This contig is upended


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JMSF037L07+                                                    CAAATTAAACATTGCCAAA
JMFS020A09+                                                               TTGCCAAA
JMSF051B18+                                              ATGAGACAAATTAAACATTGCCAAA
                      ____________________________________________________________
consensus                                                ATGAGACAAATTAAACATTGCCAAA
 
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JMSF037L07+           AGCAAGCCACCTTCCAATGGATTCCCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
JMFS020A09+           AGCAAGCCACCTTCCAATGGATTCNCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
JMSF051B18+           AGCAAGCCACCTTCCAATGGATTCCCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
                      ____________________________________________________________
consensus             AGCAAGCCACCTTCCAATGGATTCCCCATGAAAACTGAAGCAAAGGCTGCAAGAGCCATT
 
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JMSF037L07+           AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
JMFS020A09+           AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
JMSF051B18+           AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
                      ____________________________________________________________
consensus             AGCACATGGATATTAATCTTTCCACCAGCAATATCGGTAAGGGCATCAAGTGAAGCTGAA
 
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JMSF037L07+           ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
JMFS020A09+           ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
JMSF051B18+           ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
                      ____________________________________________________________
consensus             ATCCCAACGAGAGGGAAGGCAATGGCTGCGAAGGCACGCTGGAGAGGGTTCACCGCCGGT
 
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JMSF037L07+           TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
JMFS020A09+           TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
JMSF051B18+           TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
                      ____________________________________________________________
consensus             TTAGGGAGCACGTAAGGGCAAGCCGCAGCAGCAACAAACAAAGCCGCGGAGCAACAACAG
 
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JMSF037L07+           AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
JMFS020A09+           AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
JMSF051B18+           AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
JMSF018L17+                                      GCCAGTTGACTCCACCTGATCATGTCCGCAAAG
                      ____________________________________________________________
consensus             AGCTCCAAATTCTCCCGCAAAAAATTGGCCAGTTGACTCCACCTGATCATGTCCGCAAAG
 
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JMSF037L07+           TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
JMFS020A09+           TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
JMSF051B18+           TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
JMSF018L17+           TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
                      ____________________________________________________________
consensus             TTCAGAAGAACCTCCTGGGGTTTTGTTAGCTGCGCATTACACTCACCGGCACCATGGTGA
 
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JMSF037L07+           TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
JMFS020A09+           TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
JMSF051B18+           TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
JMSF018L17+           TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
                      ____________________________________________________________
consensus             TGGTGATGGTGGTGGTGGTGGTGGTGATCATGACGATGCCCATTATGCTGGTGTTTATGG
 
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JMSF037L07+           TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
JMFS020A09+           TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
JMSF051B18+           TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
JMSF018L17+           TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
                      ____________________________________________________________
consensus             TGGTCGTGGTGGTCGTGGCGGTGGTTGTGGGCGGAGCAGGAGGTGATGTAACGGCGGAAA
 
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JMSF037L07+           TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
JMFS020A09+           TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
JMSF051B18+           TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
JMSF018L17+           TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
                      ____________________________________________________________
consensus             TGGGGCACTGGAGGGGTTAAAATCGAAAAAGTGGGATAGTGTACGGGAGAGAGGTGAAGA
 
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JMSF037L07+           GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
JMFS020A09+           GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
JMSF051B18+           GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
JMSF018L17+           GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
                      ____________________________________________________________
consensus             GTCGGGTGTAATCTGGATCGCATCCGGGTTCGGATTTTGTAAACGGATAAATTAAAGCCG
 
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JMSF037L07+           GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAAC     
JMFS020A09+           GAGAAGATGGCTTGAGCC                                          
JMSF051B18+           GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAAC     
JMSF018L17+           GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAACGTTTT
                      ____________________________________________________________
consensus             GAGAAGATGGCTTGAGCCTCCATTGCAGACAGAAATTATGAGCAGAAATTAGAACGTTTT
 
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JMSF018L17+           ATTATTTGAGGAAGAAGACTTAATAAGTGTGTGCAACAACCCGCTGCCATTGGTGTGGTT
                      ____________________________________________________________
consensus             ATTATTTGAGGAAGAAGACTTAATAAGTGTGTGCAACAACCCGCTGCCATTGGTGTGGTT
 
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JMSF018L17+           GGTTGGTGTGGACATAGTTGTACCATCCGCTCCACATCGTGTGCTCACTACTTAGACCCC
                      ____________________________________________________________
consensus             GGTTGGTGTGGACATAGTTGTACCATCCGCTCCACATCGTGTGCTCACTACTTAGACCCC