Contig 011978:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF018K24-                        TACATAAGAAAGATAAATCATACTACAATTATCAAATGACATGGAC
                      ____________________________________________________________
consensus                           TACATAAGAAAGATAAATCATACTACAATTATCAAATGACATGGAC
 
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rJMSF018K24-          AAATATCATTATTTTAGAACTTTAGATATTTGCTGTTCTTGATCAAAAGATGAATTAATG
rJMSF042G04-                                                                   ATG
                      ____________________________________________________________
consensus             AAATATCATTATTTTAGAACTTTAGATATTTGCTGTTCTTGATCAAAAGATGAATTAATG
 
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rJMSF018K24-          CATTCTAAAAAATGGGGAAACAAATTTTACACAAGAAATATTTTCTTTAAATCCTCTAAT
rJMSF042G04-          CATTCTAAAAAATGGGGAAACAAATTTTACACAAGAAATATTTTCTTTAAATCCTCTAAT
rJMSF018A13-                            AACAAATTTTACACAAGAAATATTTTCTTTAAATCCTCTAAT
                      ____________________________________________________________
consensus             CATTCTAAAAAATGGGGAAACAAATTTTACACAAGAAATATTTTCTTTAAATCCTCTAAT
 
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rJMSF018K24-          CATTTATTTAAATTATTTGATGATATCAAAACCTGCCACACCTTGATCTCTCCGTCAAAG
rJMSF042G04-          CATTTATTTAAATTATTTGATGATATCAAAACCTGCCACACCTTGATCTCTCCGTCAAAG
rJMSF018A13-          CATTTATTTAAATTATTTGATGATATCAAAACCTGCCACACCTTGATCTCTCCGTCAAAG
                      ____________________________________________________________
consensus             CATTTATTTAAATTATTTGATGATATCAAAACCTGCCACACCTTGATCTCTCCGTCAAAG
 
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rJMSF018K24-          CTTCCACTAAACACCTTAATATTTCCGCCGGAATCCCCGCCGTCCGTCAGCGCCGTTAAC
rJMSF042G04-          CTTCCACTAAACACCTTAATATTTCCGCCGGAATCCCCGCCGTCCGTCAGCGCCGTTAAC
rJMSF018A13-          CTTCCACTAAACACCTTAATATTTCCGCCGGAATCCCCGCCGTCCGTCAGCGCCGTTAAC
                      ____________________________________________________________
consensus             CTTCCACTAAACACCTTAATATTTCCGCCGGAATCCCCGCCGTCCGTCAGCGCCGTTAAC
 
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rJMSF018K24-          GACCTCACCGGCTTTTCGTGCCCGTCGAGAACCGTCAAGCAGCAATACTGGCCGCCGAAG
rJMSF042G04-          GACCTCACCGGCTTTTCGTGCCCGTCGAGAACCGTCAAGCAGCAATACTGGCCGCCGAAG
rJMSF018A13-          GACCTCACCGGCTTTTCGTGCCCGTCGAGAACCGTCAAGCAGCAATACTGGCCGCCGAAG
                      ____________________________________________________________
consensus             GACCTCACCGGCTTTTCGTGCCCGTCGAGAACCGTCAAGCAGCAATACTGGCCGCCGAAG
 
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rJMSF018K24-          CCCCGCTGCCATATCCTCACCGTCCGATCGGCCGACCCGCTGAACAACAAATCCGAGACG
rJMSF042G04-          CCCCGCTGCCATATCCTCACCGTCCGATCGGCCGACCCGCTGAACAACAAATCCGAGACG
rJMSF018A13-          CCCCGCTGCCATATCCTCACCGTCCGATCGGCCGACCCGCTGAACAACAAATCCGAGACG
                      ____________________________________________________________
consensus             CCCCGCTGCCATATCCTCACCGTCCGATCGGCCGACCCGCTGAACAACAAATCCGAGACG
 
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rJMSF018K24-          TTGATCAAGCACAGAATGGCCTTCGAGTGTCCCCGTAATGCCCCCGTCACCACCATGTAG
rJMSF042G04-          TTGATCAAGCACAGAATGGCCTTCGAGTGTCCCCGTAATGCCCCCGTCACCACCATGTAG
rJMSF018A13-          TTGATCAAGCACAGAATGGCCTTCGAGTGTCCCCGTAATGCCCCCGTCACCACCATGTAG
                      ____________________________________________________________
consensus             TTGATCAAGCACAGAATGGCCTTCGAGTGTCCCCGTAATGCCCCCGTCACCACCATGTAG
 
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rJMSF018K24-          TTCGCACTGTCTTCTCTCTCCCACACCAGAATCGACCGGTCGCAGGCGCCGGAAAACAGA
rJMSF042G04-          TTCGCACTGTCTTCTCTCTCCCACACCAGAATCGACCGGTCGCAGGCGCCGGAAAACAGA
rJMSF018A13-          TTCGCACTGTCTTCTCTCTCCCACACCAGAATCGACCGGTCGCAGGCGCCGGAAAACAGA
                      ____________________________________________________________
consensus             TTCGCACTGTCTTCTCTCTCCCACACCAGAATCGACCGGTCGCAGGCGCCGGAAAACAGA
 
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rJMSF018K24-          ACCGACCCGTCGGAGTTCAACGCCAGCGCGTTCACCGCCGATTTGTGCTTCTCCAAAGTC
rJMSF042G04-          ACCGACCCGTCGGAGTTCAACGCCAGCGCGTTCACCGCCGATTTGTGCTTCTCCAAAGTC
rJMSF018A13-          ACCGACCCGTCGGAGTTCAACGCCAGCGCGTTCACCGCCGATTTGTGCTTCTCCAAAGTC
                      ____________________________________________________________
consensus             ACCGACCCGTCGGAGTTCAACGCCAGCGCGTTCACCGCCGATTTGTGCTTCTCCAAAGTC
 
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rJMSF018K24-          GCTACCAGCCCGTGCTTCTTCCCGCCGAAAGGCTTCCCCCAAACATTGATTCTCCGGTCG
rJMSF042G04-          GCTACCAGCCCGTGCTTCTTCCCGCCGAAAGGCTTCCCCCAAACATTGATTCTCCGGTCG
rJMSF018A13-          GCTACCAGCCCGTGCTTCTTCCCGCCGAAAGGCTTCCCCCAAACATTGATTCTCCGGTCG
                      ____________________________________________________________
consensus             GCTACCAGCCCGTGCTTCTTCCCGCCGAAAGGCTTCCCCCAAACATTGATTCTCCGGTCG
 
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rJMSF018K24-          GCTGAGCCGGTGAAAATCGTGCCGTCTTTCGCTAATACCACCGCGTTTATCGCGTCGTCG
rJMSF042G04-          GCTGAGCCGGTGAAAATCGTGCCGTCTTTCGCTAATACCACCGCGTTTATCGCGTCGTCG
rJMSF018A13-          GCTGAGCCGGTGAAAATCGTGCCGTCTTTCGCTAATACCACCGCGTTTATCGCGTCGTCG
                      ____________________________________________________________
consensus             GCTGAGCCGGTGAAAATCGTGCCGTCTTTCGCTAATACCACCGCGTTTATCGCGTCGTCG
 
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rJMSF018K24-          TGAGCTCTCACCGACTCGGCGCACCTAAAA                              
rJMSF042G04-          TGAGCTCTCACCGACTCGGCGCACCTAAAACCCGGCCCCGTCCAAATCTTCAAACTTCTG
rJMSF018A13-          TGAGCTCTCACCGACTCGGCGCACCTAAAACCCGGCCCCGTCCAAATCTTCAAACTTCTG
                      ____________________________________________________________
consensus             TGAGCTCTCACCGACTCGGCGCACCTAAAACCCGGCCCCGTCCAAATCTTCAAACTTCTG
 
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rJMSF042G04-          TCCCAAGAAACCGAGCACATGAAATTCTCAGACGTCGCCGCCAGTCCGGAAACGGCGTCG
rJMSF018A13-          TCCCAAGAAACCGAGCACATGAAATTCTCAGACGTCGCCGCCAGTCCGGAAACGGCGTCG
JMSF042G04+                                             TCGCCGCCAGTCCGGAAACGGCGTCG
                      ____________________________________________________________
consensus             TCCCAAGAAACCGAGCACATGAAATTCTCAGACGTCGCCGCCAGTCCGGAAACGGCGTCG
 
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rJMSF042G04-          TGGTGTTCGATCCAGAGCTTCTTCTTGTGTCGCCGGACGTTAACGTAGCTGCTAGGGAAT
rJMSF018A13-          TGGTGTTCGATCCAGAGCTTCTTCTTGTGTCGCCGGACGTTAACGTAGCTGCTAGGGAAT
JMSF042G04+           TGGTGTTCGATCCAGAGCTTCTTCTTGTGTCGCCGGACGTTAACGTAGCTGCTAGGGAAT
                      ____________________________________________________________
consensus             TGGTGTTCGATCCAGAGCTTCTTCTTGTGTCGCCGGACGTTAACGTAGCTGCTAGGGAAT
 
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rJMSF042G04-          ATAACGTTCCGT                                                
rJMSF018A13-          ATAACGTTCCGT                                                
JMSF042G04+           ATAACGTTCCGTAAACGGTCCTCCACAGTGGGGAGAGTTGAGACGAGCTTGTGACGGTTA
                      ____________________________________________________________
consensus             ATAACGTTCCGTAAACGGTCCTCCACAGTGGGGAGAGTTGAGACGAGCTTGTGACGGTTA
 
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JMSF042G04+           TCGCTGCCGAATCTCCAGACGCGGATTTTGCGGTCCTGATGAGCGGTCAAGATTTTGCCG
                      ____________________________________________________________
consensus             TCGCTGCCGAATCTCCAGACGCGGATTTTGCGGTCCTGATGAGCGGTCAAGATTTTGCCG
 
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JMSF042G04+           TTACTAAAAGAAACGGATTTCACGGAACCGGACGACGAGCCGTTGGTGTTGAACGTATCT
JMSF018A13+              CTAAAAGAAACGGATTTCACGGAACCGGACGACGAGCCGTTGGTGTTGAACGTATCT
                      ____________________________________________________________
consensus             TTACTAAAAGAAACGGATTTCACGGAACCGGACGACGAGCCGTTGGTGTTGAACGTATCT
 
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JMSF042G04+           ATAAGAATATAGTTTTCCGTTTCGAAAACATTGATTTCGTTGCCGGAGGCGGCGTACAGG
JMSF018A13+           ATAAGAGTATAGTTTTCCGTTTCGAAAACATTGATTTCGTTGCCGGAGGCGGCGTACAGG
                      ____________________________________________________________
consensus             ATAAGAGTATAGTTTTCCGTTTCGAAAACATTGATTTCGTTGCCGGAGGCGGCGTACAGG
 
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JMSF042G04+           AGGCGGTTGTCGACGGCGAGGGAGCTAACCTGGGCGGCGGGGCGGGGGTTGAGGGAGGAG
JMSF018K24+                                                           TTGAGGGAGGAG
JMSF018A13+           AGGCGGTTGTCGACGGCGAGGGAGCTAACCTGGGCGGCGGGGCGGGGGTTGAGGGAGGAG
                      ____________________________________________________________
consensus             AGGCGGTTGTCGACGGCGAGGGAGCTAACCTGGGCGGCGGGGCGGGGGTTGAGGGAGGAG
 
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JMSF042G04+           ACGCAGTGGACAGTTACGGAGAGGCTTAAGGTTTCCGGCGAGAGGTTTTGGAGGGAAGGC
JMSF018K24+           ACGCAGTGGACAGTTACGGAGAGGCTTAAGGTTTCCGGCGAGAGGTTTTGGAGGGAAGGC
JMSF018A13+           ACGCAGTGGACAGTTACGGAGAGGCTTAAGGTTTCCGGCGAGAGGTTTTGGAGGGAAGGC
                      ____________________________________________________________
consensus             ACGCAGTGGACAGTTACGGAGAGGCTTAAGGTTTCCGGCGAGAGGTTTTGGAGGGAAGGC
 
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JMSF042G04+           ACGGAGGGGAGAGTGAGGAGAGAGGCGTTGCTCTGGAGGCTACTTATGCTCGATGAGCTC
JMSF018K24+           ACGGAGGGGAGAGTGAGGAGAGAGGCGTTGCTCTAGAGGCTACTTATGCTCGATGAGCTC
JMSF018A13+           ACGGAGGGGAGAGTGAGGAGAGAGGCGTTGCTCTGGAGGCTACTTATGCTCGATGAGCTC
                      ____________________________________________________________
consensus             ACGGAGGGGAGAGTGAGGAGAGAGGCGTTGCTCTGGAGGCTACTTATGCTCGATGAGCTC
 
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JMSF042G04+           GTTTCTTGGGAGAGAGAAGGAGAGCTGCCGGTGACGTCGGAGCAGCTGCTTGTGTCGGGC
JMSF018K24+           GTTTCTTGGGAGAGAGAAGGAGAGCTGCCGGTGACGTCGGAGCAGCTGCTTGTGTCGGGC
JMSF018A13+           GTTTCTTGGGAGAGAGAAGGAGAGCTGCCGGTGACGTCGGAGCAGCTGCTTGTGTCGGGC
                      ____________________________________________________________
consensus             GTTTCTTGGGAGAGAGAAGGAGAGCTGCCGGTGACGTCGGAGCAGCTGCTTGTGTCGGGC
 
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JMSF042G04+           CCCGGTGACGGAGCATTGGCTTCCGGCGGCGGATTGGGGCGGTGTGTGGCGGCGGACGCG
JMSF018K24+           CCCGGTGACGGAGCATTGGCTTCCGGCGGCGGATTGGGGCGGTGTGTGGCGGCGGACGCG
JMSF018A13+           CCCGGTGACGGAGCATTGGCTTCCGGCGGCGGATTGGGGCGGTGTGTGGCGGCGGACGCG
                      ____________________________________________________________
consensus             CCCGGTGACGGAGCATTGGCTTCCGGCGGCGGATTGGGGCGGTGTGTGGCGGCGGACGCG
 
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JMSF042G04+           GTGGAACATGTCGACAGCCAAGATAGAGCCTTCATGGTGAAGAGAGTTTCTCCAC     
JMSF018K24+           GTGGAACATGTCGACAGCCAAGATAGAGCCTTCATGGTGAAGAGAGTTTCTCCAC     
JMSF018A13+           GTGGAACATGTCGACAGCCAAGATAGAGCCTTCATGGTGAAGAGAGTTTCTCCACAAGAC
                      ____________________________________________________________
consensus             GTGGAACATGTCGACAGCCAAGATAGAGCCTTCATGGTGAAGAGAGTTTCTCCACAAGAC