clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF030A19 | Sequence | 311 | 011970 (5) | ref|XP_004249151.1| | 50.8 | PREDICTED: uncharacterized protein LOC101247272 [Solanum lycopersicum] | 657 | 011970 (5) | ref|XP_006362249.1| | 92.8 | PREDICTED: uncharacterized protein LOC102584034 [Solanum tuberosum] |
JMSF013P11 | Sequence | 420 | 011970 (5) | ref|XP_006362249.1| | 70.9 | PREDICTED: uncharacterized protein LOC102584034 [Solanum tuberosum] | 739 | 011970 (5) | ref|XP_004249151.1| | 110 | PREDICTED: uncharacterized protein LOC101247272 [Solanum lycopersicum] |
JMSF016M01 | Sequence | 261 | 011970 (5) | ref|XP_009624665.1| | 50.4 | PREDICTED: uncharacterized protein LOC104115690 [Nicotiana tomentosiformis] | 561 | 018177 | ref|XP_006358053.1| | 2e-23 | PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Solanum tube |
This contig is upended
. : . : . : . : . : . :
rJMSF013P11- GATAAGACTTTGAAGGATTGTTGTCTTGACAACTAACTATTG
____________________________________________________________
consensus GATAAGACTTTGAAGGATTGTTGTCTTGACAACTAACTATTG
. : . : . : . : . : . :
rJMFF030A19- CTGCNAAATATAAAGGATATTTACATTCCAGGTAGA
rJMSF013P11- AAAAGTACTTTCACTATTCAATTTCTGCAAAATATAAAGGATATTTACATTCCAGGTAGA
____________________________________________________________
consensus AAAAGTACTTTCACTATTCAATTTCTGCAAAATATAAAGGATATTTACATTCCAGGTAGA
. : . : . : . : . : . :
rJMFF030A19- AGCAGTTTTTAAAATATTTCTCTACATATTTACATTGGGGGATCTTATGAAACACTGAGA
rJMSF013P11- AGCAGTTTTTAAAATATTTCTCTACATATTTACATTGGGGGATCTTATGAAACACTGAGA
____________________________________________________________
consensus AGCAGTTTTTAAAATATTTCTCTACATATTTACATTGGGGGATCTTATGAAACACTGAGA
. : . : . : . : . : . :
rJMFF030A19- TAGCATAATTGGAAAATAAGGATTCACAAGACCTGATGACAGTGAAAAGTTCTTTTTTCC
rJMSF013P11- TAGCATAATTGGAAAATAAGGATTCACAAGACCTGATGACAGTGAAAAGTTCTTTTTTCC
____________________________________________________________
consensus TAGCATAATTGGAAAATAAGGATTCACAAGACCTGATGACAGTGAAAAGTTCTTTTTTCC
. : . : . : . : . : . :
rJMFF030A19- CTTAATTTGCTTCATCCAACTTGGGTGCAGGGTGAACTGCTTTCTTGATTCTCTTGTTAT
rJMSF013P11- CTTAATTTGCTTCATCCAACTTGGGTGCAGGGTGAACTGCTTTCTTGATTCTCTTGTTAT
____________________________________________________________
consensus CTTAATTTGCTTCATCCAACTTGGGTGCAGGGTGAACTGCTTTCTTGATTCTCTTGTTAT
. : . : . : . : . : . :
rJMFF030A19- CANTGCAGATCTGGAAACAGAGTTTGTGATTCTGGTGCCTGTGCTTCTGGGTATTTCCAA
rJMSF013P11- CAGTGCAGATCTGGAAACAGAGTTTGTGATTCTGGTGCCTGTGCTTCTGGGTATTTCCAA
____________________________________________________________
consensus CAGTGCAGATCTGGAAACAGAGTTTGTGATTCTGGTGCCTGTGCTTCTGGGTATTTCCAA
. : . : . : . : . : . :
rJMFF030A19- TGAAAATTATGCNGAGAGTGGCAGCANCAGCTGCAGNTACCCCAAAGGAACAAATAGCTC
rJMSF013P11- TGAAAATTATGCAGAGAGTGGCAGCAGCAGCTGCAGCTACCCCAAAGGAACAAATAGCTC
____________________________________________________________
consensus TGAAAATTATGCAGAGAGTGGCAGCAGCAGCTGCAGCTACCCCAAAGGAACAAATAGCTC
. : . : . : . : . : . :
rJMFF030A19- CAATTCCATTGAAGCTCCACCTCCATATATTGACTCCTCCATTCTGTTGAACACCACCAT
rJMSF013P11- CAATTCCATTGAAGCTCCACCTCCATATATTGACTCCTCCATTCTGTTGAACACCACCAT
____________________________________________________________
consensus CAATTCCATTGAAGCTCCACCTCCATATATTGACTCCTCCATTCTGTTGAACACCACCAT
. : . : . : . : . : . :
rJMFF030A19- CCNTCTGATCACCTTCCATGGCCTTCCTTCTGTAAGCTTCTCCTACCTCCACCTTANGCA
rJMSF013P11- CCATCTGATCACCTTCCATGGCCTTCCTTCTGTAAGCTTCTCCTACCTCCACCTTAGGCA
JMSF013P11+ GCA
____________________________________________________________
consensus CCATCTGATCACCTTCCATGGCCTTCCTTCTGTAAGCTTCTCCTACCTCCACCTTAGGCA
. : . : . : . : . : . :
rJMFF030A19- CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
rJMSF013P11- CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
JMSF013P11+ CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
____________________________________________________________
consensus CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
. : . : . : . : . : . :
rJMFF030A19- CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
rJMSF013P11- CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
JMFF030A19+ TTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
JMSF013P11+ CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
____________________________________________________________
consensus CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
. : . : . : . : . : . :
rJMFF030A19- GGGACTCAACACCATGATCATCNTCAACTGGTAACAGTNCATGTTGAGATTGGGTGGACT
rJMSF013P11- GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
JMFF030A19+ GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
JMSF013P11+ GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
JMSF016M01+ CATGTTGAGATTGGGTGGACT
____________________________________________________________
consensus GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
. : . : . : . : . : . :
rJMFF030A19- GGNTGATGNTGATGGAGTCA
rJMSF013P11- GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGA
JMFF030A19+ GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
JMSF013P11+ GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
JMSF016M01+ GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
____________________________________________________________
consensus GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
. : . : . : . : . : . :
JMFF030A19+ CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
JMSF013P11+ CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
JMSF016M01+ CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
____________________________________________________________
consensus CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
. : . : . : . : . : . :
JMFF030A19+ CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
JMSF013P11+ CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
JMSF016M01+ CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
____________________________________________________________
consensus CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
. : . : . : . : . : . :
JMFF030A19+ GGTTAGTTTGTGTTGAATT
JMSF013P11+ GGTTAGTTTGTGTTGAATTATTGGAGCTGAAGAAGGTGGTGGCTTTCAAGTTC
JMSF016M01+ GGTTAGTTTGTGTTGAATTATTGGAGCTGAAGAAGGTGGTGGCTTTCAAGTTCAATTTTC
____________________________________________________________
consensus GGTTAGTTTGTGTTGAATTATTGGAGCTGAAGAAGGTGGTGGCTTTCAAGTTCAATTTTC