Contig 011970:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030A19Sequence311011970 (5)ref|XP_004249151.1|50.8PREDICTED: uncharacterized protein LOC101247272 [Solanum lycopersicum]657011970 (5)ref|XP_006362249.1|92.8PREDICTED: uncharacterized protein LOC102584034 [Solanum tuberosum]
JMSF013P11Sequence420011970 (5)ref|XP_006362249.1|70.9PREDICTED: uncharacterized protein LOC102584034 [Solanum tuberosum]739011970 (5)ref|XP_004249151.1|110PREDICTED: uncharacterized protein LOC101247272 [Solanum lycopersicum]
JMSF016M01Sequence261011970 (5)ref|XP_009624665.1|50.4PREDICTED: uncharacterized protein LOC104115690 [Nicotiana tomentosiformis]561018177ref|XP_006358053.1|2e-23PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Solanum tube

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF013P11- GATAAGACTTTGAAGGATTGTTGTCTTGACAACTAACTATTG
                      ____________________________________________________________
consensus GATAAGACTTTGAAGGATTGTTGTCTTGACAACTAACTATTG
 
. : . : . : . : . : . :
rJMFF030A19- CTGCNAAATATAAAGGATATTTACATTCCAGGTAGA
rJMSF013P11- AAAAGTACTTTCACTATTCAATTTCTGCAAAATATAAAGGATATTTACATTCCAGGTAGA
                      ____________________________________________________________
consensus AAAAGTACTTTCACTATTCAATTTCTGCAAAATATAAAGGATATTTACATTCCAGGTAGA
 
. : . : . : . : . : . :
rJMFF030A19- AGCAGTTTTTAAAATATTTCTCTACATATTTACATTGGGGGATCTTATGAAACACTGAGA
rJMSF013P11- AGCAGTTTTTAAAATATTTCTCTACATATTTACATTGGGGGATCTTATGAAACACTGAGA
                      ____________________________________________________________
consensus AGCAGTTTTTAAAATATTTCTCTACATATTTACATTGGGGGATCTTATGAAACACTGAGA
 
. : . : . : . : . : . :
rJMFF030A19- TAGCATAATTGGAAAATAAGGATTCACAAGACCTGATGACAGTGAAAAGTTCTTTTTTCC
rJMSF013P11- TAGCATAATTGGAAAATAAGGATTCACAAGACCTGATGACAGTGAAAAGTTCTTTTTTCC
                      ____________________________________________________________
consensus TAGCATAATTGGAAAATAAGGATTCACAAGACCTGATGACAGTGAAAAGTTCTTTTTTCC
 
. : . : . : . : . : . :
rJMFF030A19- CTTAATTTGCTTCATCCAACTTGGGTGCAGGGTGAACTGCTTTCTTGATTCTCTTGTTAT
rJMSF013P11- CTTAATTTGCTTCATCCAACTTGGGTGCAGGGTGAACTGCTTTCTTGATTCTCTTGTTAT
                      ____________________________________________________________
consensus CTTAATTTGCTTCATCCAACTTGGGTGCAGGGTGAACTGCTTTCTTGATTCTCTTGTTAT
 
. : . : . : . : . : . :
rJMFF030A19- CANTGCAGATCTGGAAACAGAGTTTGTGATTCTGGTGCCTGTGCTTCTGGGTATTTCCAA
rJMSF013P11- CAGTGCAGATCTGGAAACAGAGTTTGTGATTCTGGTGCCTGTGCTTCTGGGTATTTCCAA
                      ____________________________________________________________
consensus CAGTGCAGATCTGGAAACAGAGTTTGTGATTCTGGTGCCTGTGCTTCTGGGTATTTCCAA
 
. : . : . : . : . : . :
rJMFF030A19- TGAAAATTATGCNGAGAGTGGCAGCANCAGCTGCAGNTACCCCAAAGGAACAAATAGCTC
rJMSF013P11- TGAAAATTATGCAGAGAGTGGCAGCAGCAGCTGCAGCTACCCCAAAGGAACAAATAGCTC
                      ____________________________________________________________
consensus TGAAAATTATGCAGAGAGTGGCAGCAGCAGCTGCAGCTACCCCAAAGGAACAAATAGCTC
 
. : . : . : . : . : . :
rJMFF030A19- CAATTCCATTGAAGCTCCACCTCCATATATTGACTCCTCCATTCTGTTGAACACCACCAT
rJMSF013P11- CAATTCCATTGAAGCTCCACCTCCATATATTGACTCCTCCATTCTGTTGAACACCACCAT
                      ____________________________________________________________
consensus CAATTCCATTGAAGCTCCACCTCCATATATTGACTCCTCCATTCTGTTGAACACCACCAT
 
. : . : . : . : . : . :
rJMFF030A19- CCNTCTGATCACCTTCCATGGCCTTCCTTCTGTAAGCTTCTCCTACCTCCACCTTANGCA
rJMSF013P11- CCATCTGATCACCTTCCATGGCCTTCCTTCTGTAAGCTTCTCCTACCTCCACCTTAGGCA
JMSF013P11+ GCA
                      ____________________________________________________________
consensus CCATCTGATCACCTTCCATGGCCTTCCTTCTGTAAGCTTCTCCTACCTCCACCTTAGGCA
 
. : . : . : . : . : . :
rJMFF030A19- CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
rJMSF013P11- CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
JMSF013P11+ CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
                      ____________________________________________________________
consensus CAAAGGACTTGCTGTTGGATCTTGGTGACTCCATTTTCGCGGTGCCCGAAAACTCAGCCT
 
. : . : . : . : . : . :
rJMFF030A19- CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
rJMSF013P11- CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
JMFF030A19+ TTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
JMSF013P11+ CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
                      ____________________________________________________________
consensus CCTTCATCTTCTTGAAGAAAACCTGAGAAACTTCTTGCTCTGCCTGATCAAATACCACTG
 
. : . : . : . : . : . :
rJMFF030A19- GGGACTCAACACCATGATCATCNTCAACTGGTAACAGTNCATGTTGAGATTGGGTGGACT
rJMSF013P11- GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
JMFF030A19+ GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
JMSF013P11+ GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
JMSF016M01+ CATGTTGAGATTGGGTGGACT
                      ____________________________________________________________
consensus GGGACTCAACACCATGATCATCATCAACTGGTAACAGTTCATGTTGAGATTGGGTGGACT
 
. : . : . : . : . : . :
rJMFF030A19- GGNTGATGNTGATGGAGTCA
rJMSF013P11- GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGA
JMFF030A19+ GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
JMSF013P11+ GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
JMSF016M01+ GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
                      ____________________________________________________________
consensus GGTTGATGTTGATGGAGTCAGTGTAACATTCTCTGGAGAAGATTTTCTTGCCTCCTCCTC
 
. : . : . : . : . : . :
JMFF030A19+ CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
JMSF013P11+ CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
JMSF016M01+ CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
                      ____________________________________________________________
consensus CATCAACATCATGGATTTCAAGGAATCCATAGTCTGGTAAGATTTCCCAACCTTCAAGAT
 
. : . : . : . : . : . :
JMFF030A19+ CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
JMSF013P11+ CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
JMSF016M01+ CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
                      ____________________________________________________________
consensus CCATTAATGGAGAAACTGTAAAACTCTCAGCAGGCAGGGAGGCAGGGGAAATGAATCTTT
 
. : . : . : . : . : . :
JMFF030A19+ GGTTAGTTTGTGTTGAATT
JMSF013P11+ GGTTAGTTTGTGTTGAATTATTGGAGCTGAAGAAGGTGGTGGCTTTCAAGTTC
JMSF016M01+ GGTTAGTTTGTGTTGAATTATTGGAGCTGAAGAAGGTGGTGGCTTTCAAGTTCAATTTTC
                      ____________________________________________________________
consensus GGTTAGTTTGTGTTGAATTATTGGAGCTGAAGAAGGTGGTGGCTTTCAAGTTCAATTTTC