Contig 011967:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006P06Sequence328011967 (4)
JMSF008M12Sequence157011967 (4)748004233 (4)ref|XP_004229333.1|5e-60PREDICTED: major facilitator superfamily domain-containing protein 12 [Solanum
JMSF016F03Sequence196011967 (4)749004233 (4)ref|XP_006359136.1|6e-79PREDICTED: major facilitator superfamily domain-containing protein 12-like isof
JMSF030D14Sequence156011967 (4)679004233 (4)ref|XP_006359136.1|3e-49PREDICTED: major facilitator superfamily domain-containing protein 12-like isof

Alignment

This contig is upended


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JMSF030D14+                                              AAAAAAAAAAAACAAACAAAAAACA
JMSF008M12+                                         TTTTAAAAAAAAAAAAACAAACAAAAAACA
                      ____________________________________________________________
consensus                                           TTTTAAAAAAAAAAAAACAAACAAAAAACA
 
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JMSF030D14+           AAAAACAAATTCATACCCAGATCAACAAGCAAAGTAGAAGCAAGAGCAGAAATGACGCTT
JMSF008M12+           AAAAACAAATTCATACCCAGATCAACAAGCAAAGTAGAAGCAAGAGCAGAAATGACGCTT
JMSF006P06+                                                            AAATGACGCTT
                      ____________________________________________________________
consensus             AAAAACAAATTCATACCCAGATCAACAAGCAAAGTAGAAGCAAGAGCAGAAATGACGCTT
 
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JMSF030D14+           ATCCAAGACTGGCGGAAATGGCGATTGACGTGGAAAGAAAATGGGCGGAGTAAGAGTCAA
JMSF008M12+           ATCCAAGACTGGCGGAAATGGCGATTGACGTGGAAAGAAAATGGGCGGAGTAAGAGTCAA
JMSF006P06+           ATCCAAGACTGGCGGAAATGGCGATTGACGTGGAAAGAAAATGGGCGGAGTAAGAGTCAA
                      ____________________________________________________________
consensus             ATCCAAGACTGGCGGAAATGGCGATTGACGTGGAAAGAAAATGGGCGGAGTAAGAGTCAA
 
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JMSF030D14+           GGCAGC                                                      
JMSF008M12+           GGCAGC                                                      
JMSF006P06+           GGCAGCTCCTTTTTTGTCTCGTCCCGCTTAATCGTCTTTGATTTCCACCATAAACATATA
JMSF016F03+                                                       CCACCATAAACATATA
                      ____________________________________________________________
consensus             GGCAGCTCCTTTTTTGTCTCGTCCCGCTTAATCGTCTTTGATTTCCACCATAAACATATA
 
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JMSF006P06+           ATATATTTTTTTTCTTTCTCTATTTTGATTGAATGGGTTTCCAAATGGATTGGGATTCCG
JMSF016F03+           ATATATTTTTTTTCTTTCTCTATTTTGATTGAATGGGTTTCCAAATGGATTGGGATTCCG
                      ____________________________________________________________
consensus             ATATATTTTTTTTCTTTCTCTATTTTGATTGAATGGGTTTCCAAATGGATTGGGATTCCG
 
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JMSF006P06+           ACTAGACAGCAGCCTTTATCCACTTGCGTGCCATTCTTGCCAGTTTCCCAGTATTACTTT
JMSF016F03+           ACTAGACAGCAGCCTTTATCCACTTGCGTGCCATTCTTGCCAGTTTCCCAGTATTACTTT
                      ____________________________________________________________
consensus             ACTAGACAGCAGCCTTTATCCACTTGCGTGCCATTCTTGCCAGTTTCCCAGTATTACTTT
 
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JMSF006P06+           TCATTCTGAAAGCCTTTGCATGGAAACGTACGCCACCACCCCCACAATCTCTGC      
JMSF016F03+           TCATTCTGAAAGCCTTTGCATGGAAACGTACGCCACCACCCCCACAATCTCTGCTCTCCC
                      ____________________________________________________________
consensus             TCATTCTGAAAGCCTTTGCATGGAAACGTACGCCACCACCCCCACAATCTCTGCTCTCCC