Contig 011961:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003E09Sequence561011961 (5)emb|CDO97628.1|8e-51unnamed protein product [Coffea canephora]716012414 (4)
JMFF025I08Sequence541011961 (5)ref|XP_007041201.1|4e-47Smg-4/UPF3 family protein, putative isoform 2, partial [Theobroma cacao] gb|EOX718012414 (4)
JMFF042P13Sequence578011961 (5)ref|XP_009775100.1|1e-69PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2 [Nicotiana sy571012414 (4)
JMFS066F03Sequence627011961 (5)ref|XP_009775100.1|2e-68PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2 [Nicotiana sy
JMSF015J12Sequence489011961 (5)emb|CDO97628.1|9e-34unnamed protein product [Coffea canephora]760012414 (4)ref|XP_011088114.1|8e-17PREDICTED: regulator of nonsense transcripts UPF3-like [Sesamum indicum]

Alignment

This contig is upended


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JMFF042P13+                                                                      T
                      ____________________________________________________________
consensus                                                                        T
 
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JMFF042P13+           AGGAAGATACACAACAGGCTTTCCAATAAATTCTAGGAACTCCAGATATTCAGGATCTNT
JMFS066F03+                         CAGGCTTTCCAATAAATTCTAGGAACTCCAGATATTCAGGATCTTT
                      ____________________________________________________________
consensus             AGGAAGATACACAACAGGCTTTCCAATAAATTCTAGGAACTCCAGATATTCAGGATCTTT
 
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JMFF042P13+           CAAGATAGCCCCTTCACGGCCATCTTTCTTAGACCACTGCCTTGGAGCACGCTGTAAAGG
JMFS066F03+           CAAGATAGCCCCTTCACGGCCATCTTTCTTAGACCACTGCCTTGGAGCACGCTGTAAAGG
JMFF025I08+                                                           ACGCTGTAAAGG
JMFF003E09+                                       TTAGACCACTGCCTTGGAGCACGCTGTAAAGG
                      ____________________________________________________________
consensus             CAAGATAGCCCCTTCACGGCCATCTTTCTTAGACCACTGCCTTGGAGCACGCTGTAAAGG
 
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JMFF042P13+           GGCATACTCAACAATTGTTTTGAACTGAGACCCTTTCTCGTTAACAAAGACATGTCCATT
JMFS066F03+           GGCATACTCAACAATTGTTTTGAACTGAGACCCTTTCTCGTTAACAAAGACATGTCCATT
JMFF025I08+           GGCATACTCAACAATTGTTTTGAACTGAGACCCTTTCTCGTTAACAAAGACATGTCCATT
JMFF003E09+           GGCATACTCAACAATTGTTTTGAACTGAGACCCTTTCTCGTTAACAAAGACATGTCCATT
JMSF015J12+                                                              ATGTCCATT
                      ____________________________________________________________
consensus             GGCATACTCAACAATTGTTTTGAACTGAGACCCTTTCTCGTTAACAAAGACATGTCCATT
 
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JMFF042P13+           AAAGAACTCTGCAAACTCAACAACATCTTCAGGTGTCTTAAAGTTAATATATGCTCTTGA
JMFS066F03+           AAAGAACTCTGCAAACTCAACAACATCTTCAGGTGTCTTAAAGTTAATATATGCTCTTGA
JMFF025I08+           AAAGAACTCTGCAAACTCAACAACATCTTCAGGTGTCTTAAAGTTAATATATGCTCTTGA
JMFF003E09+           AAAGAACTCTGCAAACTCAACAACATCTTCAGGTGTCTTAAAGTTAATATATGCTCTTGA
JMSF015J12+           AAAGAACTCTGCAAACTCAACAACATCTTCAGGTGTCTTAAAGTTAATATATGCTCTTGA
                      ____________________________________________________________
consensus             AAAGAACTCTGCAAACTCAACAACATCTTCAGGTGTCTTAAAGTTAATATATGCTCTTGA
 
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JMFF042P13+           ATAAGGTTGATGTTTTTGGCTGGTTTTCCCAGGCCGAAAGGAGAGCCAGTGGTAGCGACC
JMFS066F03+           ATAAGGTTGATGTTTTTGGCTGGTTTTCCCAGGCCGAAAGGAGAGCCAGTGGTAGCGACC
JMFF025I08+           ATAAGGTTGATGTTTTTGGCTGGTTTTCCCAGGCCGAAAGGAGAGCCAGTGGTAGCGACC
JMFF003E09+           ATAAGGTTGATGTTTTTGGCTGGTTTTCCCAGGCCGAAAGGAGAGCCAGTGGTAGCGACC
JMSF015J12+           ATAAGGTTGATGTTTTTGGCTGGTTTTCCCAGGCCGAAAGGAGAGCCAGTGGTAGCGACC
                      ____________________________________________________________
consensus             ATAAGGTTGATGTTTTTGGCTGGTTTTCCCAGGCCGAAAGGAGAGCCAGTGGTAGCGACC
 
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JMFF042P13+           AGAAAAGCGAGAATCAATTTGCTCAGACAGCGTAGAACGGGGAAGCGCCGGCGGCAAGTG
JMFS066F03+           AGAAAAGCGAGAATCAATTTGCTCAGACAGCGTAGAACGGGGAAGCGCCGGCGGCAAGTG
JMFF025I08+           AGAAAAGCGAGAATCAATTTGCTCAGACAGCGTAGAACGGGGAAGCGCCGGCGGCAAGTG
JMFF003E09+           AGAAAAGCGAGAATCAATTTGCTCAGACAGCGTAGAACGGGGAAGCGCCGGCGGCAAGTG
JMSF015J12+           AGAAAAGCGAGAATCAATTTGCTCAGACAGCGTAGAACGGGGAAGCGCCGGCGGCAAGTG
                      ____________________________________________________________
consensus             AGAAAAGCGAGAATCAATTTGCTCAGACAGCGTAGAACGGGGAAGCGCCGGCGGCAAGTG
 
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JMFF042P13+           CCGCAGCACAATCTTCGTTCGATCTAACGGGCCCTTCATGCGCAACAACACTTACAGCTC
JMFS066F03+           CCGCAGCACAATCTTCGTTCGATCTAACGGGCCCTTCATGCGCAACAACACTTACAGCTC
JMFF025I08+           CCGCAGCACAATCTTCGTTCGATCTAACGGGCCCTTCATGCGCAACAACACTTACAGCTC
JMFF003E09+           CCGCAGCACAATCTTCGTTCGATCTAACGGGCCCTTCATGCGCAACAACACTTACAGCTC
JMSF015J12+           CCGCAGCACAATCTTCGTTCGATCTAACGGGCCCTTCATGCGCAACAACACTTACAGCTC
                      ____________________________________________________________
consensus             CCGCAGCACAATCTTCGTTCGATCTAACGGGCCCTTCATGCGCAACAACACTTACAGCTC
 
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JMFF042P13+           AGAAACC                                                     
JMFS066F03+           AGAAACCCTAGGCAAACCACAAAACATTAACCGGGGGGGTAAAAAACGAATTTCGCACAA
JMFF025I08+           AGAAACCCTAGGCAAACCACAAAACATTAACCGGGGGGGTAAAAAACGAATTTCGCACAA
JMFF003E09+           AGAAACCCTAGGCAAACCACAAAACATTAACCGGGGGGGTAAAAAACGAATTTCGCACAA
JMSF015J12+           AGAAACCCTAGGCAAACCACAAAACATTAACCGGGGGGGTAAAAAACGAATTTCGCACAA
                      ____________________________________________________________
consensus             AGAAACCCTAGGCAAACCACAAAACATTAACCGGGGGGGTAAAAAACGAATTTCGCACAA
 
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JMFS066F03+           AATTAACCGCTAAGCTCTAGGGAAATCACATCTTGTTCGCGGCGTAGTTTCCCCGGGGGA
JMFF025I08+           AATTAACCGCTAAGCTCTAGGGAAATCACATCTTGTTCGCGGCGTAGTTTCCCCGGGGGA
JMFF003E09+           AATTAACCGCTAAGCTCTAGGGAAATCACATCTTGTTCGCGGCGTAGTTTCCCCGGGGGA
JMSF015J12+           AATTAACCGCTAAGCTCTAGGGAAATCACATCTTGTTCGCGGCGTAGTTTCCCCGGGGGA
                      ____________________________________________________________
consensus             AATTAACCGCTAAGCTCTAGGGAAATCACATCTTGTTCGCGGCGTAGTTTCCCCGGGGGA
 
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JMFS066F03+           TCACAACAATTCCGAGCCCTAATTTCCAAGTGGGAGAGATAACGGCCATTCACGAGAGAG
JMFF025I08+           TCACAACAATTCCGAGCCCTAATTTCCAAGTGGGAGAGATAACGGCCATTCACGAGAGAG
JMFF003E09+           TCACAACAATTCCGAGCCCTAATTTCCAAGTGGGAGAGATAACGGCCATTCACGAGAGAG
JMSF015J12+           TCACAACAATTCCGAGCCCTAATTTCCAAGTGGGAGAGATAACGGCCATTCACGAGAGAG
                      ____________________________________________________________
consensus             TCACAACAATTCCGAGCCCTAATTTCCAAGTGGGAGAGATAACGGCCATTCACGAGAGAG
 
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JMFS066F03+           AGAGAACTAGAGAGAGAGAAAGTCGAACATAGAGAAGCGCT                   
JMFF025I08+           AGAGAACTAGAGAGAGAGAAAGTCGAACATAGAGAAGCGCTTTAGAGAG           
JMFF003E09+           AGAGAACTAGAGAGAGAGAAAGTCGAACATAGAGAAGCGCTTTAGAGAG           
JMSF015J12+           AGAGAACTAGAGAGAGAGAAAGTCGAACATAGAGAAGCGCTTTAGAGAGAGAAATCGGTC
                      ____________________________________________________________
consensus             AGAGAACTAGAGAGAGAGAAAGTCGAACATAGAGAAGCGCTTTAGAGAGAGAAATCGGTC