Contig 011959:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-                                                      ATTCAGGTCGTTTCCT
                      ____________________________________________________________
consensus                                                         ATTCAGGTCGTTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          GAACAGATGCACAGATGTATATATGTATGAATTTACATTACGAAATGGTTCAAACTAAAA
                      ____________________________________________________________
consensus             GAACAGATGCACAGATGTATATATGTATGAATTTACATTACGAAATGGTTCAAACTAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          AATTTGCCTGCCTTATGACAAAGGAGATATGCAATTTATAGCAGACCTCTTGGATTGAGT
                      ____________________________________________________________
consensus             AATTTGCCTGCCTTATGACAAAGGAGATATGCAATTTATAGCAGACCTCTTGGATTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          TACCATTTATTTATCTAGTCTTGAATGTAGTTCACTTGAACAAAATTTGTGTTCCAAGGA
rJMSF014P19-                                                                  AGGA
                      ____________________________________________________________
consensus             TACCATTTATTTATCTAGTCTTGAATGTAGTTCACTTGAACAAAATTTGTGTTCCAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          CAAAAGGTTTAAGCCAAAGCCCCCACAATCATCGTACTATATGGTTGAAAATGAGCTCCT
rJMSF014P19-          CAAAAGGTTTAAGCCAAAGCCCCCACAATCATCGTACTATATGGTTGAAAATGAGCTCCT
                      ____________________________________________________________
consensus             CAAAAGGTTTAAGCCAAAGCCCCCACAATCATCGTACTATATGGTTGAAAATGAGCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          GTGGCGCAAATTGGAATCAATGCCTCCACACTTCATGCGGGGTAGATTGGAATCAAAGCC
rJMSF014P19-          GTGGCGCAAATTGGAATCAATGCCTCCACACTTCATGCGGGGTAGATTGGAATCAAAGCC
                      ____________________________________________________________
consensus             GTGGCGCAAATTGGAATCAATGCCTCCACACTTCATGCGGGGTAGATTGGAATCAAAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          AGATGTTGGGTATCCAAGCAACAGCGGGATCTTAAAAACAGAAATGACATAGGAAGGAGA
rJMSF014P19-          AGATGTTGGGTATCCAAGCAACAGCGGGATCTTAAAAACAGAAATGACATAGGAAGGAGA
                      ____________________________________________________________
consensus             AGATGTTGGGTATCCAAGCAACAGCGGGATCTTAAAAACAGAAATGACATAGGAAGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          TGAACAGCTATGGTTGAATGGCAAGGAGTTTTAGCAGTTATGGCTAGATGAGAACGCGGC
rJMSF014P19-          TGAACAGCTATGGTTGAATGGCAAGGAGTTTTAGCAGTTATGGCTAGATGAGAACGCGGC
                      ____________________________________________________________
consensus             TGAACAGCTATGGTTGAATGGCAAGGAGTTTTAGCAGTTATGGCTAGATGAGAACGCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          TCTGTATATCAGCAAAAGACTTGACATCTGTACCCCATAGCCAGCAGTCGATCCCAGCAG
rJMSF014P19-          TCTGTATATCAGCAAAAGACTTGACATCTGTACCCCATAGCCAGCAGTCGATCCCAGCAG
                      ____________________________________________________________
consensus             TCTGTATATCAGCAAAAGACTTGACATCTGTACCCCATAGCCAGCAGTCGATCCCAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          CATTAGCGCCTTCTTTATCAGCCTCTGGATCGTCTCCAACATGAACTGCCTTCACCTTCT
rJMSF014P19-          CATTAGCGCCTTCTTTATCAGCCTCTGGATCGTCTCCAACATGAACTGCCTTCACCTTCT
                      ____________________________________________________________
consensus             CATTAGCGCCTTCTTTATCAGCCTCTGGATCGTCTCCAACATGAACTGCCTTCACCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          CTACGCAGATCTGATCTAAAGCAGCTTCAAATATCTTCACGTCTGGTTTCTCGTATCCNA
rJMSF014P19-          CTACGCAGATCTGATCTAAAGCAGCTTCAAATATCTTCACGTCTGGTTTCTCGTATCCAA
JMSF036J23+                       GATCTAAAGCAGCTTCAAATATCTTCACGTCTGGTTTCTCGTATCCAA
                      ____________________________________________________________
consensus             CTACGCAGATCTGATCTAAAGCAGCTTCAAATATCTTCACGTCTGGTTTCTCGTATCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          CCTCTGCAGATACTATCACAGCATCAAACAGATCTACCACATTGAGATCTTTCAATAGCT
rJMSF014P19-          CCTCTGCAGATACTATCACAGCATCAAACAGATCTACCACATTGAGATCTTTCAATAGCT
JMSF036J23+           CCTCTGCAGATACTATCACAGCATCAAACAGATCTACCACATTGAGATCTTTCAATAGCT
                      ____________________________________________________________
consensus             CCTCTGCAGATACTATCACAGCATCAAACAGATCTACCACATTGAGATCTTTCAATAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036J23-          TCCGTAAACGGGTGTCAAAATTGGAC                                  
rJMSF014P19-          TCCGTAAACGGGTGTCAAAATTGGACACAACTGCCAGCTTGACTCCTGAGTCTTTCAGAA
JMSF036J23+           TCCGTAAACGGGTGTCAAAATTGGACACAACTGCCAGCTTGACTCCTGAGTCTTTCAGAA
                      ____________________________________________________________
consensus             TCCGTAAACGGGTGTCAAAATTGGACACAACTGCCAGCTTGACTCCTGAGTCTTTCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014P19-          TCGATAAAGTATCAGAGGCTCCGGCTGGGAGACGCCAAGCATCACCATTTGCATAGTGCT
JMSF036J23+           TCGATAAAGTATCAGAGGCTCCGGCTGGGAGACGCCAAGCATCACCATTTGCATAGTGCT
                      ____________________________________________________________
consensus             TCGATAAAGTATCAGAGGCTCCGGCTGGGAGACGCCAAGCATCACCATTTGCATAGTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014P19-          GATAAACTTCTTCAAAGTAACTGTCATCATCGCAACCAGTTGCTTCAGAAACGATGAGCT
JMSF036J23+           GATAAACTTCTTCAAAGTAACTGTCATCATCGCAACCAGTTGCTTCAGAAACGATGAGCT
                      ____________________________________________________________
consensus             GATAAACTTCTTCAAAGTAACTGTCATCATCGCAACCAGTTGCTTCAGAAACGATGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014P19-          TCCAAAACGGCCTTCCATCTCCCTTATACCGTA                           
JMSF036J23+           TCCAAAACGGCCTTCCATCTCCCTTATACCGTAGGTCCTCAGGCCATGGGGCAGAAAAAG
                      ____________________________________________________________
consensus             TCCAAAACGGCCTTCCATCTCCCTTATACCGTAGGTCCTCAGGCCATGGGGCAGAAAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036J23+           CTCTTTTGAAGCCTTGCTTTATCTCAGCTGGCGTGGTGGTAAGACCATATTTTTTGCCAA
                      ____________________________________________________________
consensus             CTCTTTTGAAGCCTTGCTTTATCTCAGCTGGCGTGGTGGTAAGACCATATTTTTTGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036J23+           TAGCAGCATAAGTCTCTTCAACTGGATTCCCCAATTGCAAAAGTGTACCAGCAGCATCCA
                      ____________________________________________________________
consensus             TAGCAGCATAAGTCTCTTCAACTGGATTCCCCAATTGCAAAAGTGTACCAGCAGCATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036J23+           ACAACACTCCATCATATGCTCTCTTCACCATCTTTCTTCCTCCGGTGTGAATGTTGGTAG
JMSF014P19+                                                  CTCCGGTGTGAATGTTGGTAG
                      ____________________________________________________________
consensus             ACAACACTCCATCATATGCTCTCTTCACCATCTTTCTTCCTCCGGTGTGAATGTTGGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036J23+           CTGGGGAAGAAGAATAGCATCGAACGCAAATAGATTCAGTGAGTTTGGGGTTGAGTTTGA
JMSF014P19+           CTGGGGAAGAAGAATAGCATCGAACGCAAATAGATTCAGTGAGTTTGGGGTTGAGTTTGA
                      ____________________________________________________________
consensus             CTGGGGAAGAAGAATAGCATCGAACGCAAATAGATTCAGTGAGTTTGGGGTTGAGTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036J23+           AGGGTTTGAGAGCTCTGAGAAGAGGAATAGCTTCCATAGTACTGTTGCGTTTTTCTGGTG
JMSF014P19+           AGGGTTTGAGAGCTCTGAGAAGAGGAATAGCTTCCATAGTACTGTTGCGTTTTTCTGGTG
                      ____________________________________________________________
consensus             AGGGTTTGAGAGCTCTGAGAAGAGGAATAGCTTCCATAGTACTGTTGCGTTTTTCTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF036J23+           AAAACAACTATGTTGAAGACAGGGTTTAAGCTCC                          
JMSF014P19+           AAAACAACTATGTTGAAGACAGGGTTTAAGCTCCAGCCGTCCTGAATTGGTTCGACAGCC
                      ____________________________________________________________
consensus             AAAACAACTATGTTGAAGACAGGGTTTAAGCTCCAGCCGTCCTGAATTGGTTCGACAGCC