| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN006F19 | Sequence | 629 | 011956 (7) | ref|XP_009618458.1| | 2e-78 | PREDICTED: protein EXORDIUM-like [Nicotiana tomentosiformis] | |||||
| JMSF014A24 | Sequence | 132 | 011956 (7) | 738 | 011956 (7) | dbj|BAA33810.1| | 2e-124 | phi-1 [Nicotiana tabacum] | |||
| JMSF025F08 | Sequence | 487 | 011956 (7) | ref|XP_009631899.1| | 2e-71 | PREDICTED: protein EXORDIUM-like [Nicotiana tomentosiformis] | 453 | 011956 (7) | ref|XP_009792822.1| | 1e-43 | PREDICTED: protein EXORDIUM-like, partial [Nicotiana sylvestris] |
| JMSF049F06 | Sequence | 622 | 011956 (7) | ref|XP_010320182.1| | 7e-72 | PREDICTED: protein EXORDIUM-like [Solanum lycopersicum] | 788 | 011956 (7) | ref|XP_009618458.1| | 8e-136 | PREDICTED: protein EXORDIUM-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF014A24- CCAACAATAAACGAATCAA
rJMSF025F08- AACGAATCAA
rJMSF049F06- AACGAATCAA
____________________________________________________________
consensus CCAACAATAAACGAATCAA
. : . : . : . : . : . :
rJMSF014A24- TAAATTACAATAACGCCCTCTATATAATACTACTAGCTTATAC-TTTTTCATTTTTCCTT
rJMSF025F08- TNAATTACAATAACGCCCTCTATATAATACTACTAGCTTATACATTTTTCATTTTTCCTT
rJMSF049F06- TAAATTACAATAACGCCCTCTATATAATACTACTAGCTTATAC-TTTTTCATTTTTCCTT
____________________________________________________________
consensus TAAATTACAATAACGCCCTCTATATAATACTACTAGCTTATAC-TTTTTCATTTTTCCTT
. : . : . : . : . : . :
rJMSF014A24- TATTTTTTTTCCGTTTTTAAAATCTCGAGAATTCTAAACCAAAGTGGAACATGAAGTAGT
rJMSF025F08- TATTTTTTTTCCGTTTTTAAAATCTCGAGAATTCTAAACCAAAGTGGAACATGAAGTAGT
rJMSF049F06- TATTTTTTTTCCGTTTTTAAAATCTCGAGAATTCTAAACCAAAGTGGAACATGAAGTAGT
____________________________________________________________
consensus TATTTTTTTTCCGTTTTTAAAATCTCGAGAATTCTAAACCAAAGTGGAACATGAAGTAGT
. : . : . : . : . : . :
rJMSF014A24- GGATGGATCATACAAAGCAGGGAGCAAGTACTTTCTCCCGTTTGTACCATGCGCATTGTA
rJMSF025F08- GGATGGATCATACAAAGCAGGGAGCAAGTACTTTCTCCCGTTTGTACCATGCGCATTGTA
rJMSF049F06- GGATGGATCATACAAAGCAGGGAGCAAGTACTTTCTCCCGTTTGTACCATGCGCATTGTA
____________________________________________________________
consensus GGATGGATCATACAAAGCAGGGAGCAAGTACTTTCTCCCGTTTGTACCATGCGCATTGTA
. : . : . : . : . : . :
rJMSF014A24- GCTTGCACCAGTAGTCGGGTCGGTCAACAAGTCTCCGGCGTAACCCGGGTAAGCCCCCTT
rJMSF025F08- NCTTGCACCAGTAGTCGGGTCGGTCAACAAGTCTCCGGCGTAACCCGGGTAAGCCCCCTT
rJMSF049F06- GCTTGCACCAGTAGTCGGGTCGGTCAACAAGTCTCCGGCGTAACCCGGGTAAGCCCCCTT
____________________________________________________________
consensus GCTTGCACCAGTAGTCGGGTCGGTCAACAAGTCTCCGGCGTAACCCGGGTAAGCCCCCTT
. : . : . : . : . : . :
rJMSF014A24- GCCGTAAATCCCGGGGCAAGCCGATGCGGCTTCCAGCGGCGCGCCGGCTTCACCCTGATA
rJMSF025F08- GCCGTANATCCCGGGGCAAGCCGATGCGGCTTCCAGCGNCGCGCCGGCTTCACCCTGATA
rJMSF049F06- GCCGTAAATCCCGGGGCAAGCCGATGCGGCTTCCAGCGGCGCGCCGGCTTCACCCTGATA
____________________________________________________________
consensus GCCGTAAATCCCGGGGCAAGCCGATGCGGCTTCCAGCGGCGCGCCGGCTTCACCCTGATA
. : . : . : . : . : . :
rJMSF014A24- ATACCCGTTTCCAAACGGGTTCGTGGCGGTCCCGGCTAAGAGGCTAGCCAAGTTGATCAC
rJMSF025F08- ATACCCGTTTCCAAACGGGTTCGTGGCGGTCCCGGCTAAGANGCTAGCCNAGTTGATCAC
rJMSF049F06- ATACCCGTTTCCAAACGGGTTCGTGGCGGTCCCGGCTAAGAGGCTAGCCAAGTTGATCAC
____________________________________________________________
consensus ATACCCGTTTCCAAACGGGTTCGTGGCGGTCCCGGCTAAGAGGCTAGCCAAGTTGATCAC
. : . : . : . : . : . :
rJMSF014A24- CATCCCGTCCAAGCCGACGTCGTTGTTGGGCGCAATGAGGGCCGGGCTTTGCGGGCCGTA
rJMSF025F08- CATCCCGTCCAAGCCGACNTCGTTGTTGGGCGCAATGAGGGCCGGGCTTTGCGGGCCGTA
rJMSF049F06- CATCCCGTCCAAGCCGACGTCGTTGTTGGGCGCAATGAGGGCCGGGCTTTGCGGGCCGTA
____________________________________________________________
consensus CATCCCGTCCAAGCCGACGTCGTTGTTGGGCGCAATGAGGGCCGGGCTTTGCGGGCCGTA
. : . : . : . : . : . :
rJMSF014A24- AACGGGCTGGTGGAAAGGCCACGCGCAGTAGCCAGGGCACTGAGTCTCCGAGTTCCCAAC
rJMSF025F08- AACGGGCTGGTGGAAAGGCCA
rJMSF049F06- AACGGGCTGGTGGAAAGGCCACGCGCAGTAGCCAGGGCACTGAGTCTCCGAGTTCCCAAC
____________________________________________________________
consensus AACGGGCTGGTGGAAAGGCCACGCGCAGTAGCCAGGGCACTGAGTCTCCGAGTTCCCAAC
. : . : . : . : . : . :
rJMSF014A24- CCAGATATACGCAAACTTGTAATTCTTCCCTTTTACAAGGGCAGATTTGGAAACAGAGGA
rJMSF049F06- CCAGATATACGCAAACTTGTAATTCTTCCCTTTTACAAGGGCAGATTTGGAAACAGAGGA
JMFN006F19+ TTGGAAACAGAGGA
JMSF025F08+ TACANGGGCAGATTTGGAAACAGAGGA
JMSF049F06+ TACANGGGCAGATTTGGAAACAGAGGA
____________________________________________________________
consensus CCAGATATACGCAAACTTGTAATTCTTCCCTTTTACAAGGGCAGATTTGGAAACAGAGGA
. : . : . : . : . : . :
rJMSF014A24- CCCGTGGGTCCCACACCGGTTAACGCAGAACCCGTCGACGGTAACATCCGCGGCGGTCAA
rJMSF049F06- CCCGTGGGTCCCACACCGGTTAACGCAGAACCCGTCGACGGTAACATCCGCGGCGGTCAA
JMFN006F19+ CCCGTGGGTCCCACACCGGTTAACGCAGAACCCGTCGACGGTAACATCCGCGGCGGTCAA
JMSF025F08+ CCCGTGGGTCCCACACCGGTTAACGCAGAACCCGTCGACGGTAACATCCGCGGCGGTCAA
JMSF049F06+ CCCGTGGGTCCCACACCGGTTAACGCAGAACCCGTCGACGGTAACATCCGCGGCGGTCAA
____________________________________________________________
consensus CCCGTGGGTCCCACACCGGTTAACGCAGAACCCGTCGACGGTAACATCCGCGGCGGTCAA
. : . : . : . : . : . :
rJMSF014A24- GACGACGTTGACGGCGTTTTTCCCCTCGCCCTTTCCAGCCAGGTCAACGATCTGCTTCTG
rJMSF049F06- GACGACGTTGACGGCGTTTTTCCCCTCGCCCTTTCCAGCCAGGTCAACGATCTGCTTCTG
JMFN006F19+ GACGACGTTGACGGCGTTTTTCCCCTCGCCCTTTCCAGCCAGGTCAACGATCTGCTTCTG
JMSF025F08+ GACGACGTTGACGGCGTTTTTCCCCTCGCCCTTTCCAGCCAGGTCAACGATCTGNTTCTG
JMSF049F06+ GACGACGTTGACGGCGTTTTTCCCCTCGCCCTTTCCAGCCAGGTCAACGATCTGNTTCTG
____________________________________________________________
consensus GACGACGTTGACGGCGTTTTTCCCCTCGCCCTTTCCAGCCAGGTCAACGATCTGCTTCTG
. : . : . : . : . : . :
rJMSF014A24- GGTCAACAATTTCCCCAGCGAGTAGCTCTCGTCGAGTACCTGCCTGTTCAAAAACATCGA
rJMSF049F06- GGTCAACAATTTCCCCAGCGAGTAGCTCTCGTCGAGTACCTGCCTGTTCAAAAACATCGA
JMFN006F19+ GGTCAACAATTTCCCCAGCGAGTAGCTCTCGTCGAGTACCTGCCTGTTCAAAAACATCGA
JMSF025F08+ GGTCAACAATTTCCCCAGCGAGTAGCTCTCNTCGAGTACCNGCCTGTTCAAAAACATCGA
JMSF049F06+ GGTCAACAATTTCCCCAGCGAGTAGCTCTCNTCGAGTACCNGCCTGTTCAAAAACATCGA
____________________________________________________________
consensus GGTCAACAATTTCCCCAGCGAGTAGCTCTCGTCGAGTACCTGCCTGTTCAAAAACATCGA
. : . : . : . : . : . :
rJMSF049F06- CAAACTGTTTTTGGAGCTGGCTAAGTGGTAGTATTTCTCGGTGATCTTCCAC
JMFN006F19+ CAAACTGTTTTTGGAGCTGGCTAAGTGGTAGTATTTCTCGGTGATCTTCCACCAGGCGGC
JMSF025F08+ CAAACTGTTTTTGGAGCTGGCTAAGTGGTAGTATTTCTCGGTGATCTTCCACCNNGCGGC
JMSF049F06+ CAAACTGTTTTTGGAGCTGGCTAAGTGGTAGTATTTCTCGGTGATCTTCCACCNNGCGGC
____________________________________________________________
consensus CAAACTGTTTTTGGAGCTGGCTAAGTGGTAGTATTTCTCGGTGATCTTCCACCAGGCGGC
. : . : . : . : . : . :
JMFN006F19+ GACGGAGGGGTGGGGTTTCGCGGCGGCGGAGAGAGAGGATACGAAATCGGCGATTATAGC
JMSF025F08+ GACGGAGGGGTGGGGTTTCGCGGCGGCGGAGAGAGAGGATACGAAATCGGCGATTATAGC
JMSF049F06+ GACGGAGGGGTGGGGTTTCGCGGCGGCGGAGAGAGAGGATACGAAATCGGCGATTATAGC
____________________________________________________________
consensus GACGGAGGGGTGGGGTTTCGCGGCGGCGGAGAGAGAGGATACGAAATCGGCGATTATAGC
. : . : . : . : . : . :
JMFN006F19+ TCTCTGGGCCGGCTTGAATTTGCCGTACCAGATGAGATTGACGGAGATTTTGCCGGCGAG
JMSF025F08+ TCTCTGGGCCGGCTTGAATTTGCCGTACCAGATGAGATTGACGGAGATTTTGCCGGCGAG
JMSF049F06+ TCTCTGGGCCGGCTTGAATTTGCCGTACCAGATGAGATTGACGGAGATTTTGCCGGCGAG
____________________________________________________________
consensus TCTCTGGGCCGGCTTGAATTTGCCGTACCAGATGAGATTGACGGAGATTTTGCCGGCGAG
. : . : . : . : . : . :
JMFN006F19+ CAATGGGCCCTTGTGGTACTGGAGAAGCTGGCCTGGCTGCTCATTTACCAAGGCTGCCAG
JMSF025F08+ CAATGGGCCCNTGTGGTACTGGAGAAGCTGGCCNGGCTGCTCATTTACCAAGGCTGCCAG
JMSF049F06+ CAATGGGCCCNTGTGGTACTGGAGAAGCTGGCCNGGCTGCTCATTTACCAAGGCTGCCAG
____________________________________________________________
consensus CAATGGGCCCTTGTGGTACTGGAGAAGCTGGCCTGGCTGCTCATTTACCAAGGCTGCCAG
. : . : . : . : . : . :
JMFN006F19+ CTTTCTAGAAGCGAAGCAGACATTGAAGAATGAGATCACAAGCAGTGACATTATGAGTAA
JMSF025F08+ CTTTCTAGAAGCGAAGCANACANTGAAGAATGAGATCACA
JMSF049F06+ CTTTCTAGAAGCGAAGCANACANTGAAGAATGAGATCACANGCANTGACATTATGAGTAA
JMSF014A24+ CATTATGAGTAA
____________________________________________________________
consensus CTTTCTAGAAGCGAAGCAGACATTGAAGAATGAGATCACAAGCAGTGACATTATGAGTAA
. : . : . : . : . : . :
JMFN006F19+ TTTCGAAGCCATTTTAGGATTCGGAAAGTTCAAAAGGTTTCTCTAGAAGACAACGTTTGA
JMSF049F06+ TTTNGAAGCCATTTTAGGATTCGGAAAGTTCAAAAGGTTTCTCTAGAAGACAACGTTTGA
JMSF014A24+ TTTCGAAGCCATTTTAGGATTCGGAAAGTTCAAAAGGTTTCTCTAGAAGACAACGTTTGA
____________________________________________________________
consensus TTTCGAAGCCATTTTAGGATTCGGAAAGTTCAAAAGGTTTCTCTAGAAGACAACGTTTGA
. : . : . : . : . : . :
JMFN006F19+ AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAAGAGGAT
JMSF049F06+ AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAAGAGGATTGTGATTG
JMSF014A24+ AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAAGAGGATTGTGATTGTGAGTTTGAGCC
____________________________________________________________
consensus AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGAAGAGGATTGTGATTGTGAGTTTGAGCC