Contig 011955:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013P02Sequence420011955 (3)747004365 (5)ref|XP_006347595.1|2e-138PREDICTED: putative ribokinase-like [Solanum tuberosum]
JMSF042I03Sequence757011955 (3)ref|XP_002319785.1|4e-24hypothetical protein POPTR_0013s07620g [Populus trichocarpa] gb|EEE95708.1| hypo712004365 (5)ref|XP_006347595.1|3e-120PREDICTED: putative ribokinase-like [Solanum tuberosum]
JMSF045L17Sequence770011955 (3)ref|XP_009621737.1|4e-42PREDICTED: uncharacterized protein LOC104113319 isoform X2 [Nicotiana tomentosi760004365 (5)ref|XP_006347595.1|5e-136PREDICTED: putative ribokinase-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF045L17+                                                   CCAATAGGCTGACCACCGAG
                      ____________________________________________________________
consensus                                                     CCAATAGGCTGACCACCGAG
 
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JMSF045L17+           CCTGGCCAAGGCCACCAGGCTATTGGAAAGAGATCCACCAGCTGCAGCCTTATAACTGCA
                      ____________________________________________________________
consensus             CCTGGCCAAGGCCACCAGGCTATTGGAAAGAGATCCACCAGCTGCAGCCTTATAACTGCA
 
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JMSF045L17+           CCCGTCCATTGCACGCAGGATTTTACCCCTCTCCTCATGGTTCACAACCTTCCTTGTACC
                      ____________________________________________________________
consensus             CCCGTCCATTGCACGCAGGATTTTACCCCTCTCCTCATGGTTCACAACCTTCCTTGTACC
 
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JMSF045L17+           CTTCTCTAACCCAAGTTTCTCGAGAAAGTCATCATCAACCATGCCGGAGAAATCAACCAT
JMSF042I03+                                                                    CAT
                      ____________________________________________________________
consensus             CTTCTCTAACCCAAGTTTCTCGAGAAAGTCATCATCAACCATGCCGGAGAAATCAACCAT
 
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JMSF045L17+           AGCTTGGCCAAGGCCCAAGACATCCCATCTCATTGACAGAACAGAAGTGGGACTACTGTT
JMSF042I03+           AGCTTGGCCAAGGCCCAAGACATCCCATCTCATTGACAGAACAGAAGTGGGACTACTGTT
                      ____________________________________________________________
consensus             AGCTTGGCCAAGGCCCAAGACATCCCATCTCATTGACAGAACAGAAGTGGGACTACTGTT
 
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JMSF045L17+           GTCTTCTTCCTCATCCACATCATGAACCATTACTCCTCCATGCTCGTCATCTTCAGAATC
JMSF042I03+           GTCTTCTTCCTCATCCACATCATGAACCATTACTCCTCCATGCTCGTCATCTTCAGAATC
                      ____________________________________________________________
consensus             GTCTTCTTCCTCATCCACATCATGAACCATTACTCCTCCATGCTCGTCATCTTCAGAATC
 
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JMSF045L17+           TTCAGCCCCATCTGCTTCATTTGCGCAGGAAACATGGTCCCCGCTTCCCTCATCGGAATT
JMSF042I03+           TTCAGCCCCATNTGCTTCATTTGCGCAGGAAACATGGTCCCCGCTTCCCTCATCGGAATT
                      ____________________________________________________________
consensus             TTCAGCCCCATCTGCTTCATTTGCGCAGGAAACATGGTCCCCGCTTCCCTCATCGGAATT
 
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JMSF045L17+           GCACCGGAAGGAGGGAGACGGCGACGACGCCACTCTACACAGAAGGGCATCTTTACCACC
JMSF042I03+           GCACCGGAAGGAGGGAGACGGCGACGACGCCACTCTACACAGAAGGGCATCTTTACCACC
JMSF013P02+                                                                      C
                      ____________________________________________________________
consensus             GCACCGGAAGGAGGGAGACGGCGACGACGCCACTCTACACAGAAGGGCATCTTTACCACC
 
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JMSF045L17+           GGTCGACATAGAATAAGAAAAAGTAATACAATTAACGGAAAGCGAGAAATAATTAGGAAA
JMSF042I03+           GGTCGACATAGAATAAGAAAAAGTAATACAATTAACGGAAAGCGAGAAATAATTAGGAAA
JMSF013P02+           GGTCGACATAGAATAAGAAAAAGTAATNCAATTAACGGAAAGCGAGAAATAATTAGGAAA
                      ____________________________________________________________
consensus             GGTCGACATAGAATAAGAAAAAGTAATACAATTAACGGAAAGCGAGAAATAATTAGGAAA
 
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JMSF045L17+           TTTTTTGGATTTGGGACAGGGATGGAAATGGGGTTTCTTTAAAAGGGGAGAAACAGTGGA
JMSF042I03+           TTTTTTGGATTTGGGACAGGGATGGAAATGGGGTTTCTTTAAAAGGGGAGAAACAGTGGA
JMSF013P02+           TTTTTTGGATTTGGGACAGGGATGGAAATGGGGTTTCTTTAAAAGGGGAGAAACAGTGGA
                      ____________________________________________________________
consensus             TTTTTTGGATTTGGGACAGGGATGGAAATGGGGTTTCTTTAAAAGGGGAGAAACAGTGGA
 
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JMSF045L17+           GGGCGGAGATGAAACGTCGGGATTGGGAAGAGAGAAACACGAGGATGAGAGGATAGAGAA
JMSF042I03+           GGGCGGAGATGAAACGTCGGGATTGGGAAGAGAGAAACACGAGGATGAGAGGATAGAGAA
JMSF013P02+           GGGCGGAGATGAAACGTCGGGATTGGGAAGAGAGAAACACGAGGATGAGAGGATAGAGAA
                      ____________________________________________________________
consensus             GGGCGGAGATGAAACGTCGGGATTGGGAAGAGAGAAACACGAGGATGAGAGGATAGAGAA
 
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JMSF045L17+           AGACATGATTTTTCTTCCTATAATTGACCGAAAAAGAAATTAAAAG-AAAAAAAACAATA
JMSF042I03+           AGACATGATTTTTCTTCCTATAATTGACCGAAAAAGAAATTAAAAGAAAAAAAAACAATA
JMSF013P02+           AGACATGATTTTTCTTCCTATAATTGACCGAAAAAGAAATTAAAAG-AAAAAAAACAATA
                      ____________________________________________________________
consensus             AGACATGATTTTTCTTCCTATAATTGACCGAAAAAGAAATTAAAAG-AAAAAAAACAATA
 
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JMSF045L17+           GAAAAGAATCTCCTGCATGAATGTTCAGGGATGGATTGAGGATGGAGAAACACGTAACTC
JMSF042I03+           GAAAAGAATCTCCTGCATGAATGTTCAGGGATGGATTGAGGATGGAGAAACACGTAACTC
JMSF013P02+           GAAAAGAATCTCCTGCATGAATGTTCAGGGATGGATTGAGGATGGAGAAACACGTAACTC
                      ____________________________________________________________
consensus             GAAAAGAATCTCCTGCATGAATGTTCAGGGATGGATTGAGGATGGAGAAACACGTAACTC
 
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JMSF045L17+           CATCAAAATCTCCATAGCAGAGGTCC                                  
JMSF042I03+           CATCAAAATCTCCATAGCAGAGGTCCTATTGTCTCAAGGAAAGGAGCAAGGTTGGATATA
JMSF013P02+           CATCAAAATCTCCATAGCAGAGGTCCTATTGTCTCAAGGAAAGGAGCAAGGTTGGATATA
                      ____________________________________________________________
consensus             CATCAAAATCTCCATAGCAGAGGTCCTATTGTCTCAAGGAAAGGAGCAAGGTTGGATATA
 
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JMSF042I03+           TGGTCAGAGGAGGCTATCCGATTTTGTTTACTGAATTCC                     
JMSF013P02+           TGGTCAGAGGAGGCTATCCGATTTTGTTTACTGAATTCCTGGTCAGTGTTCAACAACACC
                      ____________________________________________________________
consensus             TGGTCAGAGGAGGCTATCCGATTTTGTTTACTGAATTCCTGGTCAGTGTTCAACAACACC