Contig 011953:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022G15Sequence444011953 (2)ref|XP_007218634.1|9e-05hypothetical protein PRUPE_ppa013665mg [Prunus persica] gb|EMJ19833.1| hypotheti668015926emb|CDP17004.1|2e-24unnamed protein product [Coffea canephora]
JMSF013I02Sequence490011953 (2)ref|XP_010663847.1|1e-22PREDICTED: RNA-binding protein 10 isoform X3 [Vitis vinifera]

Alignment

This contig is upended


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JMFF022G15+                                                                 CTTTTA
                      ____________________________________________________________
consensus                                                                   CTTTTA
 
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JMFF022G15+           AACATCTGTTCACTCACCGGAAGTCATGCTCATGGACTCCACCATAACCCTCCAAAGCCT
                      ____________________________________________________________
consensus             AACATCTGTTCACTCACCGGAAGTCATGCTCATGGACTCCACCATAACCCTCCAAAGCCT
 
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JMFF022G15+           GTGGATTCAAGACAATAAGCTATGTCAGCAATTAATTATCATGGTACAAGGTAGGGAAAT
                      ____________________________________________________________
consensus             GTGGATTCAAGACAATAAGCTATGTCAGCAATTAATTATCATGGTACAAGGTAGGGAAAT
 
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JMFF022G15+           CCATTCCACATCCTCACTGTCCCAAGGCTTTCTTTCAATGTTCTTTAAGGAAGAGATGTC
                      ____________________________________________________________
consensus             CCATTCCACATCCTCACTGTCCCAAGGCTTTCTTTCAATGTTCTTTAAGGAAGAGATGTC
 
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JMFF022G15+           TGAAAATGGGACAGTCTCATGAGCCTAGTTTCTTGTTTATCATCCCATATATGTGATTAA
                      ____________________________________________________________
consensus             TGAAAATGGGACAGTCTCATGAGCCTAGTTTCTTGTTTATCATCCCATATATGTGATTAA
 
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JMFF022G15+           GAAGGAAACCACAATTACGCTGTTATTTTCCCATCCTTGCTGAGGGCAATATCGACCAGG
JMSF013I02+                            CGCTGTTATTTTCCCATCCTTGCTGAGGGCAATATCGACCAGG
                      ____________________________________________________________
consensus             GAAGGAAACCACAATTACGCTGTTATTTTCCCATCCTTGCTGAGGGCAATATCGACCAGG
 
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JMFF022G15+           ATCCATTTCTTGCAAGAAGACTGGTGCTACCCCTACAAAGTTGTGCACGATCTTTCAGAA
JMSF013I02+           ATCCATTTCTTGCAAGAAGACTGGTGCTACCCCTACAAAGTTGTGCACGATCTTTCAGAA
                      ____________________________________________________________
consensus             ATCCATTTCTTGCAAGAAGACTGGTGCTACCCCTACAAAGTTGTGCACGATCTTTCAGAA
 
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JMFF022G15+           GATTCAGGAGCAAGATGACTGAAAACCTTTCAATTAAACCGCTGCAGAATCGAGGAAACA
JMSF013I02+           GATTCAGGAGCAAGATGACTGAAAACCTTTCAATTAAACCGCTGCAGAATCGAGGAAACA
                      ____________________________________________________________
consensus             GATTCAGGAGCAAGATGACTGAAAACCTTTCAATTAAACCGCTGCAGAATCGAGGAAACA
 
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JMFF022G15+           GCTCCGATTGTGATTCCC                                          
JMSF013I02+           GCTCCGATTGTGATTCCCGGAGCTCCACCCGGATCGATTCTACAAATCAAATCAAATCCA
                      ____________________________________________________________
consensus             GCTCCGATTGTGATTCCCGGAGCTCCACCCGGATCGATTCTACAAATCAAATCAAATCCA
 
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JMSF013I02+           AATACGACGAATAGCTTGACCGATTACAGGCTGAAGGTCTTCTACGAAGCATAAATTGAA
                      ____________________________________________________________
consensus             AATACGACGAATAGCTTGACCGATTACAGGCTGAAGGTCTTCTACGAAGCATAAATTGAA
 
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JMSF013I02+           GGCAGAGAGGTGGGGGTGGGAAATCTGAATAAACAAACCCTAAGACACTGTTATTTGTCC
                      ____________________________________________________________
consensus             GGCAGAGAGGTGGGGGTGGGAAATCTGAATAAACAAACCCTAAGACACTGTTATTTGTCC