Contig 011952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013G13Sequence508011952 (5)gb|EYU27237.1|6e-16hypothetical protein MIMGU_mgv1a017585mg [Erythranthe guttata]418011952 (5)
JMSF035E18Sequence511011952 (5)gb|EYU27237.1|6e-16hypothetical protein MIMGU_mgv1a017585mg [Erythranthe guttata]515011952 (5)
JMSF038F04Sequence325011952 (5)gb|EYU27237.1|2e-07hypothetical protein MIMGU_mgv1a017585mg [Erythranthe guttata]

Alignment

This contig is upended


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rJMSF035E18-                              TGGTTTTTTTTTTTTTNCAAGGGAAATAANTAATAGNGGC
JMSF035E18+                                   TTTTTTTTTTATACAAAGGAAATAAATAATAGAGGC
JMSF013G13+                                                    GGAAATAAATAATAGAGGC
                      ____________________________________________________________
consensus                                 TGGTTTTTTTTTTTTTACAAGGGAAATAAATAATAGAGGC
 
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rJMSF035E18-          AAANGANTTTTTGAAATAAANTTAACAATCAAAGGTCTACGGCTACCCANTTACNCCNTC
JMSF035E18+           AAATGAATTTTTGAAATAAAATTAACAATCAAATGTCTACTGCTACCCAATTACTCCATC
JMSF013G13+           AAATGAATTTTTGAAATAAAATTAACAATCAAATGTCTACTGCTACCCAATTACTCCATC
                      ____________________________________________________________
consensus             AAATGAATTTTTGAAATAAAATTAACAATCAAATGTCTACTGCTACCCAATTACTCCATC
 
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rJMSF035E18-          ANTTACAAACCNCCCTACNCNGTACAAACNCAGGTATTATATATATTTATATCNCNCAGG
JMSF035E18+           AATTACAAACCACCCTACACAGTACAAACACATGTATTATATATATTTATATCTCTCAGT
rJMSF013G13-            TTACAAACCNCCCTACNCNGTACAAACNCANGTATTANATATATTTATATCNCNCAGG
JMSF013G13+           AATTACAAACCACCCTACACAGTACAAACACATGTATTATATATATTTATATCTCTCAGT
                      ____________________________________________________________
consensus             AATTACAAACCACCCTACACAGTACAAACACATGTATTATATATATTTATATCTCTCAGT
 
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rJMSF035E18-          GAANCAGGTAAGTAANCNCCANAGCTNCCAGCATCANAGCATANGCTATTCCTNGATCAA
JMSF035E18+           GAATCATGTAAGTAATCGCCAGAGCTACCAGCATCAGAGCATATGCTATTCCTTGATCAA
rJMSF013G13-          GAATCAGGTAAGTAATCNCCANAGCTACCAGCATCANAGCATANGCTATTCCTNGATCAA
JMSF013G13+           GAATCATGTAAGTAATCGCCAGAGCTACCAGCATCAGAGCATATGCTATTCCTTGATCAA
                      ____________________________________________________________
consensus             GAATCATGTAAGTAATCGCCAGAGCTACCAGCATCAGAGCATATGCTATTCCTTGATCAA
 
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rJMSF035E18-          TNGCCNCCCCATCACTTGGGGGGGCAGGGGCAGGGGCCNGGGCNTTAANGGAAGGAATAN
JMSF035E18+           TTGCCACCCCATCACTTGTGGGGGCAGGGGCAGGGGCCTGGGCATTAATGGAAGGAATAG
JMSF038F04+                   CCATCACTTGTGGGGGCAGGGGCAGGGGCCTGGGCATTAATGGAAGGAATAG
rJMSF013G13-          TTGCCNCCCCATCACTTGNGGGGGCAGGGGCAGGGGCCNGGGCNTTAANGGAAGGAATAN
JMSF013G13+           TTGCCACCCCATCACTTGTGGGGGCAGGGGCAGGGGCCTGGGCATTAATGGAAGGAATAG
                      ____________________________________________________________
consensus             TTGCCACCCCATCACTTGTGGGGGCAGGGGCAGGGGCCTGGGCATTAATGGAAGGAATAG
 
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rJMSF035E18-          CCAANGCCAANACAATAGCAAAANCAGACTTTAANAANCAAACNCTNGAANCCNCCANAG
JMSF035E18+           CCAATGCCAAGACAATAGCAAAAACAGACATTAAGAAGCAAACTCTTGAAACCTCCATAG
JMSF038F04+           CCAATGCCAAGACAATAGCAAAAACAGACATTAAGAAGCAAACTCTTGAAACCTCCATAG
rJMSF013G13-          CCAANGCCAANACAATANCAAAANCANACTTTAANAANCAAACTCTTGAANCCNCCATAG
JMSF013G13+           CCAATGCCAAGACAATAGCAAAAACAGACATTAAGAAGCAAACTCTTGAAACCTCCATAG
                      ____________________________________________________________
consensus             CCAATGCCAAGACAATAGCAAAAACAGACATTAAGAAGCAAACTCTTGAAACCTCCATAG
 
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rJMSF035E18-          TTGCNGCTATAACNCCTTCAAAGCTTCANCCNCNCAAATTTTCTNGATTTCNATCTTCAA
JMSF035E18+           TTGCTGCTATAACACCTTCAAAGCTTCAACCACTCAAATTTTCTTGATTTCTATCTTCAA
JMSF038F04+           TTGCTGCTATAACACCTTCAAAGCTTCAACCACTCAAATTTTCTTGATTTCTATCTTCAA
rJMSF013G13-          TTGCNGCTATAACNCCTTCAAAGCTTCAACCNCNCAAATTTTCTNGATTTCNATCTTCAA
JMSF013G13+           TTGCTGCTATAACACCTTCAAAGCTTCAACCACTCAAATTTTCTTGATTTCTATCTTCAA
                      ____________________________________________________________
consensus             TTGCTGCTATAACACCTTCAAAGCTTCAACCACTCAAATTTTCTTGATTTCTATCTTCAA
 
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rJMSF035E18-          GGGCNGCTTGACATAANCCTNGATNGTATACTTAAANCCCNGAAATTGTNGGGCTATNTA
JMSF035E18+           TGGCTGCTTGACATAAGCCTTGATTGTATACTTAAATCCCTGAAATTGTTGGGCTATATA
JMSF038F04+           TGGCTGCTTGACATAAGCCTTGATTGTATACTTAAATCCCTGAAATTGTTGGGCTATATA
rJMSF013G13-          GGGCNGCTTGACATAANCCTNGATNGTATACTTAAANCCCNGAAATTGTNGGGCTATNTA
JMSF013G13+           TGGCTGCTTGACATAAGCCTTGATTGTATACTTAAATCCCTGAAATTGTTGGGCTATATA
                      ____________________________________________________________
consensus             TGGCTGCTTGACATAAGCCTTGATTGTATACTTAAATCCCTGAAATTGTTGGGCTATATA
 
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rJMSF035E18-          AAGAAGGGCANAGAGAGAGAGAANATTATTCNGGGTTTGATTGAAAGGA           
JMSF035E18+           AAGAAAGGCAGAGAGAGAGAGAAGATTATTCTGGGTTTGATTGAGAGGATC         
JMSF038F04+           AAGAAAGGCAGAGAGAGAGAGAAGATTATTCTGGGTTTGATTGAGAGGATC         
rJMSF013G13-          AAGAAGGGCANAGAGAGAGAGAAAATTATTCNGGGTTTGATTGAAAGGATC         
JMSF013G13+           AAGAAAGGCAGAGAGAGAGAGAAGATTATTCTGGGTTTGATTGAGAGGATCTCCAGAGCT
                      ____________________________________________________________
consensus             AAGAAAGGCAGAGAGAGAGAGAAGATTATTCTGGGTTTGATTGAGAGGATCTCCAGAGCT