Contig 011947:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS101G08Sequence608011947 (6)ref|XP_006351312.1|6e-114PREDICTED: villin-2-like [Solanum tuberosum]
JMSF003K08Sequence310006361 (9)ref|XP_009758247.1|3e-05PREDICTED: uncharacterized protein LOC104210965 isoform X1 [Nicotiana sylvestri167011947 (6)emb|CDP17048.1|1e-07unnamed protein product [Coffea canephora]
JMSF004H24Sequence280011947 (6)ref|XP_009611102.1|1e-07PREDICTED: uncharacterized protein LOC104104669 isoform X2 [Nicotiana tomentosi
JMSF012P06Sequence458011947 (6)741011947 (6)ref|XP_010036452.1|3e-16PREDICTED: villin-3-like isoform X1 [Eucalyptus grandis]
JMSF044N13Sequence729011947 (6)ref|XP_009611103.1|2e-13PREDICTED: uncharacterized protein LOC104104669 isoform X3 [Nicotiana tomentosi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF012P06- ATCATCATCCAGTC
                      ____________________________________________________________
consensus ATCATCATCCAGTC
 
. : . : . : . : . : . :
rJMSF012P06- ATAATACTAAAAAAAACAATTCTACGAACCAAGTCTAAATGATTACAACGTCAAATTATA
                      ____________________________________________________________
consensus ATAATACTAAAAAAAACAATTCTACGAACCAAGTCTAAATGATTACAACGTCAAATTATA
 
. : . : . : . : . : . :
rJMSF012P06- CCTACTCTATATAATTTGATAGAATATCGGCACATTCTGAACGCACCAGATCAATAACCG
                      ____________________________________________________________
consensus CCTACTCTATATAATTTGATAGAATATCGGCACATTCTGAACGCACCAGATCAATAACCG
 
. : . : . : . : . : . :
rJMSF012P06- CTTTGTCATAATCAACTTGTTGAAACTTGCGGCGACCGAGGAGAATGGTGGCGACCGGCG
                      ____________________________________________________________
consensus CTTTGTCATAATCAACTTGTTGAAACTTGCGGCGACCGAGGAGAATGGTGGCGACCGGCG
 
. : . : . : . : . : . :
JMFS101G08+ TGGATTTGAATGAATGTGTTTCATAACCT
rJMSF012P06- AGCTTGCGGTAATGGGCGAAGGGCGAATGAATGGACTTGAATGAATGTGTCTCATAACCT
                      ____________________________________________________________
consensus AGCTTGCGGTAATGGGCGAAGGGCGAATGAATGGATTTGAATGAATGTGTTTCATAACCT
 
. : . : . : . : . : . :
JMFS101G08+ TGAATAAGCCGAGTAATACGCGTTGATTTGGGTCTATTTTGAGAGGCTATGAACTCCTCT
rJMSF012P06- TGAATAAGCCGAGTAATACACATCGATTTGGGTCTATTTTGAGAGTCTATGAACTCCTCT
                      ____________________________________________________________
consensus TGAATAAGCCGAGTAATACGCGTTGATTTGGGTCTATTTTGAGAGTCTATGAACTCCTCT
 
. : . : . : . : . : . :
JMFS101G08+ GCAGCTTGAATAGCAGATTTCCTC-TCATTCACTTGTGTTACACGGCCAACCCAAACAAA
rJMSF012P06- GCAGCTTGAATAGCAGATTTCCTCATCATTCACTTGTGTTACACGGCCAACCCAAAAAAA
                      ____________________________________________________________
consensus GCAGCTTGAATAGCAGATTTCCTCATCATTCACTTGTGTTACACGGCCAACCCAAACAAA
 
. : . : . : . : . : . :
JMFS101G08+ TACCTCATCACCACAATCTAATAAATAGCATCTG
rJMSF003K08- CATCTGAGAAGTATACCATTTTCCATCCTTCC
rJMSF012P06- TACCTTTTCACCACAATCTAATAAATAGCATCTGAGAAGTATACCATTTTCCATCCTTCC
                      ____________________________________________________________
consensus TACCTTTTCACCACAATCTAATAAATAGCATCTGAGAAGTATACCATTTTCCATCCTTCC
 
. : . : . : . : . : . :
rJMSF003K08- AATCCATGTGAGGTCTTAATTCTGAGTGATTGANCACCCTCTCCTT
rJMSF012P06- AATCCATGTGAGGTCTTAATTCTGAGTGATTGAGCAGCCTCTCCTTTCGATGTAGACCTT
JMSF044N13+ TCGATGTAGACCTT
                      ____________________________________________________________
consensus AATCCATGTGAGGTCTTAATTCTGAGTGATTGAGCAGCCTCTCCTTTCGATGTAGACCTT
 
. : . : . : . : . : . :
JMSF004H24+ GGCGTTCTTCTTTTTGGAACCGGATCTTGTAGAGGAAGAAGGAGAAGAA
rJMSF012P06- GGCGTTCCAAAGGCGTTCTTCTTTTTGGAACCGAATCATGTAGTGGAAGAAGGAGAAGAA
JMSF044N13+ GGCGTTCCAAAGGCGTTCTTCTTTTTGGAACCGAATCATGTAGTGGAAGAAGGAGAAGAA
                      ____________________________________________________________
consensus GGCGTTCCAAAGGCGTTCTTCTTTTTGGAACCGAATCATGTAGTGGAAGAAGGAGAAGAA
 
. : . : . : . : . : . :
JMSF004H24+ GAGGGAGGAGGAGGATTAGGGTCAAGAATGACGGCCTCGAACCACGCTCCCGTGAAGCCT
rJMSF012P06- GATGGAGGAGGAGGATTAGGGTCAAGAATGACGGCCCCAAACCACGTTCCCGTGAAGCCT
JMSF044N13+ GATGGAGGAGGAGGATTAGGGTCAAGAATGACGGCCCCAAACCACGTTCCCGTGAAGCCT
JMSF012P06+ CAAGAATGACGGCCCCAAACCACGTTCCCGTGAAGCCT
                      ____________________________________________________________
consensus GATGGAGGAGGAGGATTAGGGTCAAGAATGACGGCCCCAAACCACGTTCCCGTGAAGCCT
 
. : . : . : . : . : . :
JMSF004H24+ TCTTCGTCT
rJMSF012P06- TCTTCGTCTGTGCACACCTCAGGTCCTCAACCAACGACCCCTTGGCTAGTAGCTGCTTCT
JMSF044N13+ TCTTCGTCTGTGCACACCTCAGGTCCTCAACCAACGACCCCTTGGCTAGTAGCTGCTTCT
JMSF012P06+ TCTTCGTCTGTGCACACCTCAGGTCCTCAACCAACGACCCCTTGGCTAGTAGCTGCTTCT
                      ____________________________________________________________
consensus TCTTCGTCTGTGCACACCTCAGGTCCTCAACCAACGACCCCTTGGCTAGTAGCTGCTTCT
 
. : . : . : . : . : . :
rJMSF012P06- GCTAAAATAAAATAGAAAAATTAANTAATTACNAAAACATTTTGTACGTACCTGCTGCGG
JMSF044N13+ GCTAAAATAAAATAGAAAAATTAAATAATTACAAAAACATTTTGTACGTACCTGCTGCGG
JMSF012P06+ GCTAAAATAAAATAGAAAAATTAAATAATTACAAAAACATTTTGTACGTACCTGCTGCGG
                      ____________________________________________________________
consensus GCTAAAATAAAATAGAAAAATTAAATAATTACAAAAACATTTTGTACGTACCTGCTGCGG
 
. : . : . : . : . : . :
rJMSF012P06- AGGCGAC
JMSF044N13+ AGGCGACGACCGAGGAGGAGCTTCGGAGATCTCAATTGAAAGCCATGAAAGTTGAGTTTG
JMSF012P06+ AGGCGACGACCGAGGAGGAGCTTCGGAGATCTCAATTGAAAGCCATGAAAGTTGAGTTTG
                      ____________________________________________________________
consensus AGGCGACGACCGAGGAGGAGCTTCGGAGATCTCAATTGAAAGCCATGAAAGTTGAGTTTG
 
. : . : . : . : . : . :
JMSF044N13+ CAGAAATCGATAATTTTCTGAGATTCCAGATATGAAGAGAGAAAAGAGAGGAGGAATGGT
JMSF012P06+ CAGAAATCGATAATTTTCTGAGATTCCAGATATGAAGAGAGAAAAGAGAGGAGGAATGGT
                      ____________________________________________________________
consensus CAGAAATCGATAATTTTCTGAGATTCCAGATATGAAGAGAGAAAAGAGAGGAGGAATGGT
 
. : . : . : . : . : . :
JMSF044N13+ TAAACCCTAGTATATCTTCTTTCACTTGGAGCTCTGTAATGATTTCTAAACTAAAATGTT
JMSF012P06+ TAAACCCTAGTATATCTTCTTTCACTTGGAGCTCTGTAATGATTTCTAAACTAAAATGTT
                      ____________________________________________________________
consensus TAAACCCTAGTATATCTTCTTTCACTTGGAGCTCTGTAATGATTTCTAAACTAAAATGTT
 
. : . : . : . : . : . :
JMSF044N13+ TTTACTGCGGAGATGGCTAGTGTGGAGAATGGCGGTCGGCGGAGGCGGAGATGTCTGAGG
JMSF012P06+ TTTACTGCGGAGATGGCTAGTGTGGAGAATGGTGGTCGGCGGAGGCGGAGATGTCTGAGG
                      ____________________________________________________________
consensus TTTACTGCGGAGATGGCTAGTGTGGAGAATGGTGGTCGGCGGAGGCGGAGATGTCTGAGG
 
. : . : . : . : . : . :
JMSF044N13+ ACAATGGCGGTTGGTGAAGAGCACTCTGACTGCGAAGATGTCT
JMSF012P06+ ACAATGGCGGTTGGTGAAGAGCACTCTGACTGCGAAGATGTCTGAGGACAATGGTAGTCC
                      ____________________________________________________________
consensus ACAATGGCGGTTGGTGAAGAGCACTCTGACTGCGAAGATGTCTGAGGACAATGGTAGTCC