Contig 011937:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS053H02Sequence610011937 (5)ref|XP_010921201.1|1e-17PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840
JMFS093H12Sequence606011937 (5)ref|XP_009768306.1|4e-13PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840
JMFS146F07Sequence616011937 (5)ref|XP_009768306.1|9e-04PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840
JMSF011M01Sequence393011937 (5)750007056 (2)dbj|BAF46308.1|6e-100leucine-rich repeat transmembrane protein kinase [Ipomoea nil]
JMSF013A21Sequence462011937 (5)764007056 (2)dbj|BAF46308.1|4e-125leucine-rich repeat transmembrane protein kinase [Ipomoea nil]

Alignment

This contig is upended


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JMFS053H02+                                                         TCCCAGACAGGTTC
                      ____________________________________________________________
consensus                                                           TCCCAGACAGGTTC
 
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JMFS053H02+           CTTGNTAGTAGTTGTAGTTCTTTAACATGAAGATAATTATCCTTCTTAGTTGAATTATGG
                      ____________________________________________________________
consensus             CTTGNTAGTAGTTGTAGTTCTTTAACATGAAGATAATTATCCTTCTTAGTTGAATTATGG
 
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JMFS053H02+           CATAACACCCCAGTCCACTTTGAAGTGCACGGATCTCCTCTTGTCCAGTTTCTGAGGTTG
                      ____________________________________________________________
consensus             CATAACACCCCAGTCCACTTTGAAGTGCACGGATCTCCTCTTGTCCAGTTTCTGAGGTTG
 
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JMFS053H02+           TTGTATGGATCAATGAAACTTTTCTTGATGGAAAGCAACGCTTCCATCCAAATAACGGGA
JMSF013A21+                                           ACAATAAAACTCACTCCAAATAACGGGA
JMFS093H12+                                                         TCCAAATAACGGGA
JMFS146F07+                                                         TCCAAATAACGGGA
                      ____________________________________________________________
consensus             TTGTATGGATCAATGAAACTTTTCTTGATGGAACGCTACGCTTCCCTCCAAATAACGGGA
 
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JMFS053H02+           TTCTTAAACTCGCCATTTCAGAGATACCCAACTCTTCAATATCTTCAAACTCTAGGTGGA
JMSF013A21+           TTCTTAAACTCGCCATTTCAGAGATACCCAACTCTTCAATATCTTCAAACTCTAGGTGGA
JMFS093H12+           TTCTTAAACTCGCCATTTCAGAGATACCCAACTCTTCAATATCTTCAAACTCTAGGTGGA
JMFS146F07+           TTCTTAAACTCGCCATTTCAGAGATACCCAACTCTTCAATATCTTCAAACTCTAGGTGGA
                      ____________________________________________________________
consensus             TTCTTAAACTCGCCATTTCAGAGATACCCAACTCTTCAATATCTTCAAACTCTAGGTGGA
 
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JMFS053H02+           CCTTAACACCATGAAATTATGAAAATTTCAGCATTAATTAAGCCCTGATATAATAAAGAA
JMSF013A21+           CCTTAACACCATGAAATTATGAAAATTTCAGCATTAATTAAGCCCTGATATAATAAAGAA
JMFS093H12+           CCTTAACACCATGAAATTATGAAAATTTCAGCATTAATTAAGCCCTGATATAATAAAGAA
JMFS146F07+           CCTTAACACCATGAAATTATGAAAATTTCAGCATTAATTAAGCCCTGATATAATAAAGAA
JMSF011M01+                                      TCAGCATTAATTAAGCCCTGATATAATAAAGAA
                      ____________________________________________________________
consensus             CCTTAACACCATGAAATTATGAAAATTTCAGCATTAATTAAGCCCTGATATAATAAAGAA
 
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JMFS053H02+           AAAGTAGAAAACAAACAGAAAACCCATAACTCCAGCCATTTGCAAATCTATTCAACAAAT
JMSF013A21+           AAAGTAGAAAACAAACAGAAAACCCATAACTCCAGCCATTTGCAAATCTATTCAACAAAT
JMFS093H12+           AAAGTAGAAAACAAACAGAAAACCCATAACTCCAGCCATTTGCAAATCTATTCAACAAAT
JMFS146F07+           AAAGTAGAAAACAAACAGAAAACCCATAACTCCAGCCATTTGCAAATCTATTCAACAAAT
JMSF011M01+           AAAGTAGAAANCAAACAGAAAACCCATAACTCCAGCCATTTGCAAATCTATTCAACAAAT
                      ____________________________________________________________
consensus             AAAGTAGAAAACAAACAGAAAACCCATAACTCCAGCCATTTGCAAATCTATTCAACAAAT
 
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JMFS053H02+           CTAGCACCTAAAGAAAACTAATATAACTAGTTAAGATGTGCAAATACTCCACAAAGAAGA
JMSF013A21+           CTAGCACCTAAAGAAAACTAATATAACTAGTTAAGATGTGCAAATACTCCACAAAGAAGA
JMFS093H12+           CTAGCACCTAAAGAAAACTAATATAACTAGTTAAGATGTGCAAATACTCCACAAAGAAGA
JMFS146F07+           CTAGCACCTAAAGAAAACTAATATAACTAGTTAAGATGTGCAAATACTCCACAAAGAAGA
JMSF011M01+           CTAGCACCTAAAGAAAACTAATATAACTAGTTAAGATGTGCAAATACTCCACAAAGAAGA
                      ____________________________________________________________
consensus             CTAGCACCTAAAGAAAACTAATATAACTAGTTAAGATGTGCAAATACTCCACAAAGAAGA
 
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JMFS053H02+           ATAGAATATAATGATAAATTCCTCTCATCTAATTATTGGTTTAAAACAAATTGCAAAAAT
JMSF013A21+           ATAGAATATAATGATCAATTCCTCTCATCTAATTATTGGTTTAAAACAAATTGCAAAAAT
JMFS093H12+           ATAGAATATAATGATCAATTCCTCTCATCTAATTATTGGTTTAAAACAAATTGCAAAAAT
JMFS146F07+           ATAGAATATAATGATCAATTCCTCTCATCTAATTATTGGTTTAAAACAAATTGCAAAAAT
JMSF011M01+           ATAGAATATAATGATCAATTCCTCTCATCTAATTATTGGTTTAAAACAAATTGCAAAAAT
                      ____________________________________________________________
consensus             ATAGAATATAATGATCAATTCCTCTCATCTAATTATTGGTTTAAAACAAATTGCAAAAAT
 
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JMFS053H02+           GGGGTTATCATCATCGTTTATTAACTAATAGTGTACTTAGAGAGGTGAAAATAAATAGAA
JMSF013A21+           GGGGTTATCATCATCGTTTATTAACTAATAGTGTACTTAGAGAGGTGAAAATAAATAGAA
JMFS093H12+           GGGGTTATCATCATCGTTTATTAACTAATAGTGTACTTAGAGAGGTGAAAATAAATAGAA
JMFS146F07+           GGGGTTATCATCATCGTTTATTAACTAATAGTGTACTTAGAGAGGTGAAAATAAATAGAA
JMSF011M01+           GGGGTTATCATCATCGTTTATTAACTAATAGTGTACTTAGAGAGGTGAAAATAAATAGAA
                      ____________________________________________________________
consensus             GGGGTTATCATCATCGTTTATTAACTAATAGTGTACTTAGAGAGGTGAAAATAAATAGAA
 
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JMFS053H02+           TAAGAAATTGAGTGGGAAATTGCTAGTTTCTCTTCTATTATCTCTATCCCATCAAA    
JMSF013A21+           TAAGAAATTGAGTGGGAAATTGCTAGTTTCTCTTCTATTATCTCTATCCCATCAAACATT
JMFS093H12+           TAAGAAATTGAGTGGGAAATTGCTAGTTTCTCTTCTATTATCTCTATCCCATCAAACATT
JMFS146F07+           TAAGAAATTGAGTGGGAAATTGCTAGTTTCTCTTCTATTATCTCTATCCCATCAAACATT
JMSF011M01+           TAAGAAATTGAGTGGGAAATTGCTAGTTTCTCTTCTATTATCTCTATCCCATCAAACATT
                      ____________________________________________________________
consensus             TAAGAAATTGAGTGGGAAATTGCTAGTTTCTCTTCTATTATCTCTATCCCATCAAACATT
 
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JMSF013A21+           TCAAGGGAAAATT                                               
JMFS093H12+           TCAAGGGAAAATTGCCTCTCATCTT                                   
JMFS146F07+           TCAAGGGAAAATTGCCTCTCATCTT                                   
JMSF011M01+           TCAAGGGAAAATTGCCTCTCATCTTTCTAAACACATATTTGTAATATGAACCTAAATTTC
                      ____________________________________________________________
consensus             TCAAGGGAAAATTGCCTCTCATCTTTCTAAACACATATTTGTAATATGAACCTAAATTTC