Contig 011936:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N07Sequence603010828 (11)ref|XP_010645879.1|0.001PREDICTED: far upstream element-binding protein 1 isoform X1 [Vitis vinifera]733011936 (9)ref|XP_006573840.1|2e-16PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding protein 2-like [Gl
JMFF018P22Sequence615010828 (11)656011936 (9)ref|XP_002277528.2|4e-18PREDICTED: far upstream element-binding protein 1 isoform X2 [Vitis vinifera]
JMFF043E22Sequence609010828 (11)ref|XP_002277528.2|9e-04PREDICTED: far upstream element-binding protein 1 isoform X2 [Vitis vinifera]583011936 (9)gb|KDP45615.1|5e-14hypothetical protein JCGZ_17222 [Jatropha curcas]
JMSF007D05Sequence311010828 (11)683011936 (9)ref|XP_010645879.1|4e-18PREDICTED: far upstream element-binding protein 1 isoform X1 [Vitis vinifera]
JMSF011J02Sequence356010828 (11)ref|XP_006353593.1|5e-04PREDICTED: far upstream element-binding protein 2-like [Solanum tuberosum]749011936 (9)gb|KDP45615.1|4e-14hypothetical protein JCGZ_17222 [Jatropha curcas]
JMSF011K10Sequence281011936 (9)243011936 (9)
JMSF013B03Sequence236010828 (11)794011936 (9)ref|XP_002277528.2|8e-24PREDICTED: far upstream element-binding protein 1 isoform X2 [Vitis vinifera]
JMSF038M11Sequence299010828 (11)218011936 (9)ref|XP_007019886.1|4e-10KH domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY17111.1

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038M11+ CTTANCAGGCCCCCCCTATGGTTTCAACTCAA
                      ____________________________________________________________
consensus CTTANCAGGCCCCCCCTATGGTTTCAACTCAA
 
. : . : . : . : . : . :
rJMSF038M11+ GGGATGGCATGGATATGCCACCTCAGCAACAGTACCCTTATGCAGCTACTGGGCCTATGC
rJMSF007D05+ CTATGC
rJMFF018N07+ TTATGCAGNTANTGGGCNTATGC
rJMSF013B03+ ATGGCATGAATATGCCACCTCAGCAACAGTACCCTTATGCAGCTACTGGGCCTATGC
rJMSF011J02+ CTATGC
                      ____________________________________________________________
consensus GGGATGGCATGGATATGCCACCTCAGCAACAGTACCCTTATGCAGCTACTGGGCCTATGC
 
. : . : . : . : . : . :
rJMSF038M11+ AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCA
rJMSF007D05+ AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCA
rJMFF018N07+ AGCAGCAAACTTATCCCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCC
rJMSF013B03+ AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCA-CCC
rJMSF011J02+ AGCAGCAAACCTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCC
                      ____________________________________________________________
consensus AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCC
 
. : . : . : . : . : . :
rJMSF038M11+ ---CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMSF007D05+ ---CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMFF018P22+ CACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMFF018N07+ CACCAACCACCTACCAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMSF013B03+ A--CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMSF011J02+ A--CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
                      ____________________________________________________________
consensus A--CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
 
. : . : . : . : . : . :
rJMSF038M11+ ATCTGGGTATG
rJMSF007D05+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
rJMFF018P22+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC-TGGCATATGCTCAAGTTGGGCAA
rJMFF018N07+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCCCTGGCATATGCTCAAGTTGGGCAA
rJMSF013B03+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
rJMSF011J02+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
                      ____________________________________________________________
consensus ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
 
. : . : . : . : . : . :
rJMSF007D05+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMFF018P22+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMFF018N07+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMSF013B03+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMSF011J02+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMFF043E22+ CTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
                      ____________________________________________________________
consensus CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
 
. : . : . : . : . : . :
rJMSF007D05+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMFF018P22+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMFF018N07+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMSF013B03+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMSF011J02+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMFF043E22+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
                      ____________________________________________________________
consensus TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
 
. : . : . : . : . : . :
rJMSF007D05+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMFF018P22+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMFF018N07+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMSF013B03+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMSF011J02+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMFF043E22+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
                      ____________________________________________________________
consensus CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
 
. : . : . : . : . : . :
rJMSF007D05+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMFF018P22+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMFF018N07+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMSF013B03+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMSF011J02+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACGCAAGCGGCAGCGGGTTACGGG
rJMFF043E22+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
                      ____________________________________________________________
consensus TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
 
. : . : . : . : . : . :
rJMSF007D05+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMFF018P22+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMFF018N07+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMSF013B03+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMSF011J02+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMFF043E22+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
                      ____________________________________________________________
consensus AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
 
. : . : . : . : . : . :
rJMSF007D05+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMFF018P22+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMFF018N07+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMSF013B03+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMSF011J02+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMSF011K10+ GAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMFF043E22+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
JMSF011K10- GAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
                      ____________________________________________________________
consensus TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
 
. : . : . : . : . : . :
rJMSF007D05+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMFF018P22+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMFF018N07+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMSF013B03+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMSF011J02+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMSF011K10+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMFF043E22+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
JMSF011K10- CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
                      ____________________________________________________________
consensus CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
 
. : . : . : . : . : . :
rJMSF007D05+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMFF018P22+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMFF018N07+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMSF013B03+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMSF011J02+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMSF011K10+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMFF043E22+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
JMSF011K10- CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
                      ____________________________________________________________
consensus CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
 
. : . : . : . : . : . :
rJMSF007D05+ GATTTAGCTGTCATAAGTCATTAT
rJMFF018P22+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMFF018N07+ GATTTAGCTGTCGTAAGTCATTATGTAATCCTTACTACACTTATGAGGAT
rJMSF013B03+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMSF011J02+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMSF011K10+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMFF043E22+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
JMSF011K10- GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
                      ____________________________________________________________
consensus GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
 
. : . : . : . : . : . :
rJMFF018P22+ TTTGT
rJMSF013B03+ TTTGTT
rJMSF011J02+ TTTGTT
rJMSF011K10+ TTTGTT
rJMFF043E22+ TTTGTTTGGACCTGCTTTCTTGCTTTAATTTTATAAGCACATTTTTCATG
JMSF011K10- TTTGTTTGGACCTGCTTTCTTGCTTTAATTTTATAAGCACATTTTTCATGAAAAAAAAAA
                      ____________________________________________________________
consensus TTTGTTTGGACCTGCTTTCTTGCTTTAATTTTATAAGCACATTTTTCATGAAAAAAAAAA