clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF018N07 | Sequence | 603 | 010828 (11) | ref|XP_010645879.1| | 0.001 | PREDICTED: far upstream element-binding protein 1 isoform X1 [Vitis vinifera] | 733 | 011936 (9) | ref|XP_006573840.1| | 2e-16 | PREDICTED: LOW QUALITY PROTEIN: far upstream element-binding protein 2-like [Gl |
JMFF018P22 | Sequence | 615 | 010828 (11) | 656 | 011936 (9) | ref|XP_002277528.2| | 4e-18 | PREDICTED: far upstream element-binding protein 1 isoform X2 [Vitis vinifera] | |||
JMFF043E22 | Sequence | 609 | 010828 (11) | ref|XP_002277528.2| | 9e-04 | PREDICTED: far upstream element-binding protein 1 isoform X2 [Vitis vinifera] | 583 | 011936 (9) | gb|KDP45615.1| | 5e-14 | hypothetical protein JCGZ_17222 [Jatropha curcas] |
JMSF007D05 | Sequence | 311 | 010828 (11) | 683 | 011936 (9) | ref|XP_010645879.1| | 4e-18 | PREDICTED: far upstream element-binding protein 1 isoform X1 [Vitis vinifera] | |||
JMSF011J02 | Sequence | 356 | 010828 (11) | ref|XP_006353593.1| | 5e-04 | PREDICTED: far upstream element-binding protein 2-like [Solanum tuberosum] | 749 | 011936 (9) | gb|KDP45615.1| | 4e-14 | hypothetical protein JCGZ_17222 [Jatropha curcas] |
JMSF011K10 | Sequence | 281 | 011936 (9) | 243 | 011936 (9) | ||||||
JMSF013B03 | Sequence | 236 | 010828 (11) | 794 | 011936 (9) | ref|XP_002277528.2| | 8e-24 | PREDICTED: far upstream element-binding protein 1 isoform X2 [Vitis vinifera] | |||
JMSF038M11 | Sequence | 299 | 010828 (11) | 218 | 011936 (9) | ref|XP_007019886.1| | 4e-10 | KH domain-containing protein, putative isoform 1 [Theobroma cacao] gb|EOY17111.1 |
This contig is upended
. : . : . : . : . : . :
rJMSF038M11+ CTTANCAGGCCCCCCCTATGGTTTCAACTCAA
____________________________________________________________
consensus CTTANCAGGCCCCCCCTATGGTTTCAACTCAA
. : . : . : . : . : . :
rJMSF038M11+ GGGATGGCATGGATATGCCACCTCAGCAACAGTACCCTTATGCAGCTACTGGGCCTATGC
rJMSF007D05+ CTATGC
rJMFF018N07+ TTATGCAGNTANTGGGCNTATGC
rJMSF013B03+ ATGGCATGAATATGCCACCTCAGCAACAGTACCCTTATGCAGCTACTGGGCCTATGC
rJMSF011J02+ CTATGC
____________________________________________________________
consensus GGGATGGCATGGATATGCCACCTCAGCAACAGTACCCTTATGCAGCTACTGGGCCTATGC
. : . : . : . : . : . :
rJMSF038M11+ AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCA
rJMSF007D05+ AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCA
rJMFF018N07+ AGCAGCAAACTTATCCCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCC
rJMSF013B03+ AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCA-CCC
rJMSF011J02+ AGCAGCAAACCTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCC
____________________________________________________________
consensus AGCAGCAAACTTAT-CCCCCATATGGTTCTGCACCTGCCAGTGATGGTTACACCCACCCC
. : . : . : . : . : . :
rJMSF038M11+ ---CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMSF007D05+ ---CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMFF018P22+ CACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMFF018N07+ CACCAACCACCTACCAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMSF013B03+ A--CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
rJMSF011J02+ A--CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
____________________________________________________________
consensus A--CAACCACCTA-CAACAGCACCGGGTCCTGTTTATCCTCAGCAAGGGGCTCAGCCTGT
. : . : . : . : . : . :
rJMSF038M11+ ATCTGGGTATG
rJMSF007D05+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
rJMFF018P22+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC-TGGCATATGCTCAAGTTGGGCAA
rJMFF018N07+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCCCTGGCATATGCTCAAGTTGGGCAA
rJMSF013B03+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
rJMSF011J02+ ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
____________________________________________________________
consensus ATCTGGGTATGGTCAGCCTGTTGCGCAGCAACCCCC--TGCATATGCTCAAGTTGGGCAA
. : . : . : . : . : . :
rJMSF007D05+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMFF018P22+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMFF018N07+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMSF013B03+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMSF011J02+ CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
rJMFF043E22+ CTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
____________________________________________________________
consensus CAGCCTGCTGCTTATGGTTCATATCCTTCGCAACCGGCTGACAACAGTGCAGGTTATGGG
. : . : . : . : . : . :
rJMSF007D05+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMFF018P22+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMFF018N07+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMSF013B03+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMSF011J02+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
rJMFF043E22+ TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
____________________________________________________________
consensus TATCAGGCACCAGCAGATCCTTCTTATGCTAGCACCCAGTCTACAGCAACTTACAATGCA
. : . : . : . : . : . :
rJMSF007D05+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMFF018P22+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMFF018N07+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMSF013B03+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMSF011J02+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
rJMFF043E22+ CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
____________________________________________________________
consensus CAGTCAACAGGTCAGCAAGGTTATGCTCAACCAGCTCCCACTCAAACTGGCTATGATCAA
. : . : . : . : . : . :
rJMSF007D05+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMFF018P22+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMFF018N07+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMSF013B03+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
rJMSF011J02+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACGCAAGCGGCAGCGGGTTACGGG
rJMFF043E22+ TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
____________________________________________________________
consensus TCCGTTGCTCAGCAAGGTGGTTATGTAAGTCAACCTACACAAGCGGCAGCGGGTTACGGG
. : . : . : . : . : . :
rJMSF007D05+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMFF018P22+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMFF018N07+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMSF013B03+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMSF011J02+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
rJMFF043E22+ AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
____________________________________________________________
consensus AATAGTGTATGATCTCACCCTGGTTGTCCTATATACGATTCAGGCATATGGTGTGCACCA
. : . : . : . : . : . :
rJMSF007D05+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMFF018P22+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMFF018N07+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMSF013B03+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMSF011J02+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMSF011K10+ GAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
rJMFF043E22+ TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
JMSF011K10- GAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
____________________________________________________________
consensus TGCTCTAATTATCTGATGGGAGTTGGCCATGAGAAATTAGCTGCCTGTGAGATTAGCTTG
. : . : . : . : . : . :
rJMSF007D05+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMFF018P22+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMFF018N07+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMSF013B03+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMSF011J02+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMSF011K10+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
rJMFF043E22+ CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
JMSF011K10- CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
____________________________________________________________
consensus CAACTTCTTGCATCTGTGTCAATTAGGATCTACTCTACTCTGGGAAGGAATGACGCTAAT
. : . : . : . : . : . :
rJMSF007D05+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMFF018P22+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMFF018N07+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMSF013B03+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMSF011J02+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMSF011K10+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
rJMFF043E22+ CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
JMSF011K10- CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
____________________________________________________________
consensus CTTCTGTTGTAGTTTTCCTTTTACCCTAGCGGCTAGGTTATTTCCTTCCCATTTTACTTT
. : . : . : . : . : . :
rJMSF007D05+ GATTTAGCTGTCATAAGTCATTAT
rJMFF018P22+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMFF018N07+ GATTTAGCTGTCGTAAGTCATTATGTAATCCTTACTACACTTATGAGGAT
rJMSF013B03+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMSF011J02+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMSF011K10+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
rJMFF043E22+ GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
JMSF011K10- GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
____________________________________________________________
consensus GATTTAGCTGTCATAAGTCATTATGTAATCCTTACTACACTTATGAGGATATGTTAACAT
. : . : . : . : . : . :
rJMFF018P22+ TTTGT
rJMSF013B03+ TTTGTT
rJMSF011J02+ TTTGTT
rJMSF011K10+ TTTGTT
rJMFF043E22+ TTTGTTTGGACCTGCTTTCTTGCTTTAATTTTATAAGCACATTTTTCATG
JMSF011K10- TTTGTTTGGACCTGCTTTCTTGCTTTAATTTTATAAGCACATTTTTCATGAAAAAAAAAA
____________________________________________________________
consensus TTTGTTTGGACCTGCTTTCTTGCTTTAATTTTATAAGCACATTTTTCATGAAAAAAAAAA