Contig 011935:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF011J10-                                         AGGCGNAATACAGAGATAATAAAAACTCA
                      ____________________________________________________________
consensus                                            AGGCGNAATACAGAGATAATAAAAACTCA
 
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rJMSF011J10-          ACAATGACATGTAAATAATATTAATGATAGCAATATACAAAAGCTCCAGGTAACAGAAAA
rJMSF020D23-                                          ATATACAAAAGCTCCAGGTAACAGAAAA
                      ____________________________________________________________
consensus             ACAATGACATGTAAATAATATTAATGATAGCAATATACAAAAGCTCCAGGTAACAGAAAA
 
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rJMSF011J10-          TAATTTCCACCTACAAAGGGAGAACAGGAAAAAAGGAAAAAGAAAAAAAAAAAGTTATGA
rJMSF020D23-          TAATTTCCACCTACAAAGGGAGAACAGGAAAAAAGGAAAAAG-AAAAAAAAAAGTTATGA
                      ____________________________________________________________
consensus             TAATTTCCACCTACAAAGGGAGAACAGGAAAAAAGGAAAAAGAAAAAAAAAAAGTTATGA
 
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rJMSF011J10-          GGGCTAAAATCAGGAATGACCGTANTAAGTGAGAGAGACTTGATGCCTGCCAGTGCCTGG
rJMSF020D23-          GGGCTAAAATCAGGAATGACCGTAGTAAGTGAGAGAGACTTGATGCCNGCCAGTGCCNGG
                      ____________________________________________________________
consensus             GGGCTAAAATCAGGAATGACCGTAGTAAGTGAGAGAGACTTGATGCCTGCCAGTGCCTGG
 
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rJMSF011J10-          TGTGTCCAGAGATACCGAACAGNGGTTTCATACAAAATGGTACAACAGTAAGTCCATCCA
rJMSF020D23-          NGTGTCCAGAGATACCGAACAGNGGTTTCATACAAAANGGTACAACAGTAAGTCCATCCA
                      ____________________________________________________________
consensus             TGTGTCCAGAGATACCGAACAGNGGTTTCATACAAAATGGTACAACAGTAAGTCCATCCA
 
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rJMSF011J10-          AATTCACATCTCAATCGTATGAGGTAAGTTAAGCCTTATACTCGCGAACTCGCATCCNTT
rJMSF020D23-          AATTCACATCTCAATCGTATGAGGTAAGTTAAGCCTTATACTCGCGAACTCGCATCCATT
                      ____________________________________________________________
consensus             AATTCACATCTCAATCGTATGAGGTAAGTTAAGCCTTATACTCGCGAACTCGCATCCATT
 
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rJMSF011J10-          TTGTANATGACCACTTGTTCCCTTTAATGACAGGGCAACCNCCATGTAAACTGGATGGGT
rJMSF020D23-          TTGTANATGACCACTTGTTCCCTTTAATGACAGGGCAACCACCATGTAAACTGGATGGGT
                      ____________________________________________________________
consensus             TTGTANATGACCACTTGTTCCCTTTAATGACAGGGCAACCACCATGTAAACTGGATGGGT
 
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rJMSF011J10-          CTAGAGATCCATCAGGTTTCATGCTCCANAAAAGCAATGCATCNCCCATCTTTGGTTTTA
rJMSF020D23-          CTAGAGATCCATCAGGTTTCATGCTCCANAAAAGCAATGCATCACCCATCTTTGGTTTTA
                      ____________________________________________________________
consensus             CTAGAGATCCATCAGGTTTCATGCTCCANAAAAGCAATGCATCACCCATCTTTGGTTTTA
 
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rJMSF011J10-          CTGANAGTCCNCCTTTTCCACATTCANATAGTTCGTTCCNCCAAGGAACAGCAGAAATAT
rJMSF020D23-          CTGANAGTCCACCTTTTCCACATTCANATAGTTCGTTCCACCAAGGAACAGCANAAATAT
                      ____________________________________________________________
consensus             CTGANAGTCCACCTTTTCCACATTCANATAGTTCGTTCCACCAAGGAACAGCAGAAATAT
 
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rJMSF011J10-          TTCCTTTGGCAGAAGGGAATACTGTTTCTCCCCCTTCTTCAACATCTGAAAGGTACATGA
rJMSF020D23-          TTCCTTTGGCANAAGGGAATACNGTTTCTCCCCCTTCTTCAACATCTGAAAGGTACATGA
                      ____________________________________________________________
consensus             TTCCTTTGGCAGAAGGGAATACTGTTTCTCCCCCTTCTTCAACATCTGAAAGGTACATGA
 
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rJMSF011J10-          NAACTGTAGCAATACGCTGACCACCATTCTTCGTGTTGTAATCATCAAGAAAGTAATCAT
rJMSF020D23-          NAACTGTAGCAATACGCTGACCACCATTCTTCGTGTTGTAATCATCAAGAAAGTAATCAT
                      ____________________________________________________________
consensus             NAACTGTAGCAATACGCTGACCACCATTCTTCGTGTTGTAATCATCAAGAAAGTAATCAT
 
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rJMSF011J10-          AGTGAGGTTCATACTTCTGGCCCACTTCATAATGGAGAATTTGAAGGCC           
rJMSF020D23-          AGTGAGGTTCATACTTCTGGCCCACTTCATAATGGAGAATTTGAAGGCCCTCACCATGTT
JMSF020D23+                                   CTTCATAATGGAGAATTTGAAGGCCCTCACCATGTT
                      ____________________________________________________________
consensus             AGTGAGGTTCATACTTCTGGCCCACTTCATAATGGAGAATTTGAAGGCCCTCACCATGTT
 
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rJMSF020D23-          CTGCGGGTATGAAGGTGAAATCTGCAATCCTTTTCTCAATATTCCTGATTATTTTATCAC
JMFN046D24+                            AAATCTGCAATCCTTTTCTCAATATTCCTGATTATTTTATCAC
JMSF020D23+           CTGCGGGTATGAAGGTGAAATCTGCAATCCTTTTCTCAATATTCCTGATTATTTTATCAC
                      ____________________________________________________________
consensus             CTGCGGGTATGAAGGTGAAATCTGCAATCCTTTTCTCAATATTCCTGATTATTTTATCAC
 
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rJMSF020D23-          GT                                                          
JMFN046D24+           GTCCTCTATGAAGAAATGTTCCTGAGCTTGTTCGTACCCTGCTATCTTTGCTCTTCCCAG
JMSF020D23+           GTCCTCTATGAAGAAATGTTCCTGAGCTTGTTCGTACCCTGCTATCTTTGCTCTTCCCAG
                      ____________________________________________________________
consensus             GTCCTCTATGAAGAAATGTTCCTGAGCTTGTTCGTACCCTGCTATCTTTGCTCTTCCCAG
 
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JMFN046D24+           TTTCACTATCAACAACAGTTGACTTTTGCATATGGGGTTTAGCAAGATTAATCAAATATT
JMSF020D23+           TTTCACTATCAACAACAGTTGACTTTTGCATATGGGGTTTAGCAAGATTAATCAAATATT
                      ____________________________________________________________
consensus             TTTCACTATCAACAACAGTTGACTTTTGCATATGGGGTTTAGCAAGATTAATCAAATATT
 
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JMFN046D24+           CACATTCATACTTGGACAAGAAATTGTGATAAACAAAGGCTCGAGGCTCCCAGGAAATCA
JMSF020D23+           CACATTCATACTTGGACAAGAAATTGTGATAAACAAAGGCTCGAGGCTCCCAGGAAATCA
                      ____________________________________________________________
consensus             CACATTCATACTTGGACAAGAAATTGTGATAAACAAAGGCTCGAGGCTCCCAGGAAATCA
 
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JMFN046D24+           CTTCAACCCAGCTATCTCCTTTTCTAACATCATCTTCTTCTTGCTCTTCTCTTTCGAGTG
JMSF020D23+           CTTCAACCCAGCTATCTCCTTTTCTAACATCATCTTCTTCTTGCTCTTCTCTTTCGAGTG
JMSF011J10+                                  CTAACATCATCTTCTTCNTGCTCTTCTCTTTCGAGTG
                      ____________________________________________________________
consensus             CTTCAACCCAGCTATCTCCTTTTCTAACATCATCTTCTTCTTGCTCTTCTCTTTCGAGTG
 
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JMFN046D24+           TGTTGTGCGCGATTGTGCTGAGATCGTGTGCTTTCTGAGAGCCCCTGGAGCTGCTGGGAA
JMSF020D23+           TGTTGTGCGCGATTGTGCTGAGATCGTGTGCTTTCTGAGAGCCCCTGGAGCTGCTGGGAA
JMSF011J10+           TGTTGTGCGCGATTGTGCTGAGATCGTGTGCTTTCTGAGAGCCCCTGGAGCTGCTGGGAA
                      ____________________________________________________________
consensus             TGTTGTGCGCGATTGTGCTGAGATCGTGTGCTTTCTGAGAGCCCCTGGAGCTGCTGGGAA
 
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JMFN046D24+           TCGAGAGAATTCCGAAAGCGAGGAGCATTAAAACGACCAAAGAGAGAATTGCAAACACGG
JMSF020D23+           TCGAGAGAATTCCGAAAGCGAGGAGCATTAAAACGACCAAAGAGAGAATTGCAAACACGG
JMSF011J10+           TCGAGAGAATTCCGAAAGCGAGGAGCATTAAAACGACCAAAGAGAGAATTGCAAACACGG
                      ____________________________________________________________
consensus             TCGAGAGAATTCCGAAAGCGAGGAGCATTAAAACGACCAAAGAGAGAATTGCAAACACGG
 
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JMFN046D24+           CGAAAGCGGTGGTCGCCGACGACGTCGTTCTGCGTGGGAGCCCTCGGCCGTATTTCCCCT
JMSF020D23+           CGAAAGCGGTGGTCGCCAACGACGTCGTTCTGCGTGGGAGCCCTCGGCCGTATTTCCCCT
JMSF011J10+           CGAAAGCGGTGGTCGCCGACGACGTCGTTCTGCGTGGGAGCCCTCGGCCGTATTTCCCCT
                      ____________________________________________________________
consensus             CGAAAGCGGTGGTCGCCGACGACGTCGTTCTGCGTGGGAGCCCTCGGCCGTATTTCCCCT
 
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JMFN046D24+           TCGCCATTGTTACAGCGTAAGCTCTGTAGTTCCGATCAAAATCTAGGGATTAAATTCAAA
JMSF020D23+           TCGCCATTGTTACAGCGTAAGCTCTGTAGTTCCGATCAAAATCTAGGGATTAAATTCAAA
JMSF011J10+           TCGCCATTGTTACAGCGTAAGCTCTGTAGTTCCGATCAAAATCTAGGGATTAAATTCAAA
                      ____________________________________________________________
consensus             TCGCCATTGTTACAGCGTAAGCTCTGTAGTTCCGATCAAAATCTAGGGATTAAATTCAAA
 
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JMFN046D24+           GCCGTCGGAGAAACGGTTGCAGCTTATTTATACTCAGTTTGTCAACAATA          
JMSF020D23+           GCCGTCGGAGAAACGGTTGCAGCTTATTTATACTCAGTTTGTCAACAATA          
JMSF011J10+           GCCGTCGGAGAAACGGTTGCAGCTTATTTATACTCAGTTTGTCAACAATACACAGGGGAA
                      ____________________________________________________________
consensus             GCCGTCGGAGAAACGGTTGCAGCTTATTTATACTCAGTTTGTCAACAATACACAGGGGAA
 
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JMSF011J10+           GATGCAAATGGAGCTGGTAGCAGAAGAAGAAGAGTTAACTGCGTACGCAATTTTGGAATT
                      ____________________________________________________________
consensus             GATGCAAATGGAGCTGGTAGCAGAAGAAGAAGAGTTAACTGCGTACGCAATTTTGGAATT
 
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JMSF011J10+           TTCTATTGCAATGTTGACCTTTTACTTCCTGCTTTTTCTGAATCTACCCACAGATTAACC
                      ____________________________________________________________
consensus             TTCTATTGCAATGTTGACCTTTTACTTCCTGCTTTTTCTGAATCTACCCACAGATTAACC