Contig 011923:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003C04Sequence332011923 (3)708002776 (3)ref|XP_010275124.1|2e-108PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027
JMSF009D24Sequence417011923 (3)ref|XP_010275936.1|1e-12PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027709002776 (3)ref|XP_010275124.1|2e-108PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027
JMSF051J14Sequence626011923 (3)ref|XP_010275124.1|4e-55PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027740002776 (3)ref|XP_010275124.1|5e-122PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+                                                                CTCTGTC
                      ____________________________________________________________
consensus                                                                  CTCTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           ACGGAATTCAATTGCTCTCCAAGTGATTGGATATTGGCCTTTAATCTCATAATCATGGTT
                      ____________________________________________________________
consensus             ACGGAATTCAATTGCTCTCCAAGTGATTGGATATTGGCCTTTAATCTCATAATCATGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           GCACTATCATAGTGGAGTTGCTGGGCTTGACAAAGCAGAAGTGCCATTTCACGGATTCTT
                      ____________________________________________________________
consensus             GCACTATCATAGTGGAGTTGCTGGGCTTGACAAAGCAGAAGTGCCATTTCACGGATTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           GATTCTGCCTCTTTCATCGTTAATGGGGTTTTCCTCGTCGCTGAATTTGATAGGAGTACT
                      ____________________________________________________________
consensus             GATTCTGCCTCTTTCATCGTTAATGGGGTTTTCCTCGTCGCTGAATTTGATAGGAGTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           TGTGATTTGTGAATCTTGGCACTTATTTCCCATGCAAGTTGAAGGTTGTTGCTCTCTTTT
                      ____________________________________________________________
consensus             TGTGATTTGTGAATCTTGGCACTTATTTCCCATGCAAGTTGAAGGTTGTTGCTCTCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           GCAATCAGAACAAAGGATTTAGCAAGAGATATTTGATCATTCACTTGCCTAGATATTGAA
JMSF009D24+              ATCAGAACAANGGATTTAGCAAGAGATATTTGATCATTCACTTGCCTAGATATTGAA
                      ____________________________________________________________
consensus             GCAATCAGAACAAAGGATTTAGCAAGAGATATTTGATCATTCACTTGCCTAGATATTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           TGAGGGTCCAACATTTCTTCGGTGATGTTAAAACCTTCCAGAAATTTGTTCCGTCTATTA
JMSF003C04+                            TTCGGTGATGTTAAAACCTTCCAGAAATTTGTTCCGTCTATTA
JMSF009D24+           TGAGGGTCCAACATTTCTTCGGTGATGTTAAAACCTTCCAGAAATTTGTTCCGTCTATTA
                      ____________________________________________________________
consensus             TGAGGGTCCAACATTTCTTCGGTGATGTTAAAACCTTCCAGAAATTTGTTCCGTCTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           AATCCCTGGATTAAAGAAGGCGTGGAGGGAGAAGAGCTTTTCTGGCGGATGATGGCGAAT
JMSF003C04+           AATCCCTGGATTAAAGAAGGCGTGGAGGGAGAAGAGCTTTTCTGGCGGATGATGGCGAAT
JMSF009D24+           AATCCCTGGATTAAAGAAGGCGTGGAGGGAGAAGAGCTTTTCTGGCGGATGATGGCGAAT
                      ____________________________________________________________
consensus             AATCCCTGGATTAAAGAAGGCGTGGAGGGAGAAGAGCTTTTCTGGCGGATGATGGCGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           AAGAGAAGCGCTAAGAAGGCGCAGAATATCAGCCATCCCAGTTTGGAGTACCGTCTCTTT
JMSF003C04+           AAGAGAAGCGCTAAGAAGGCGCAGAATATCAGCCATCCCAGTTTGGAGTACCGTCTCTTT
JMSF009D24+           AAGAGAAGCGCTAAGAAGGCGCAGAATATCAGCCATCCCAGTTTGGAGTACCGTCTCTTT
                      ____________________________________________________________
consensus             AAGAGAAGCGCTAAGAAGGCGCAGAATATCAGCCATCCCAGTTTGGAGTACCGTCTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           GCGGGTCTGCTTCGAAAATCGAACGACCTTCGCCTCATTGAAAATCTCCCCTTCCTATTT
JMSF003C04+           GCGGGTCTGCTTCGAAAATCGAACGACCTTCGCCTCATTGAAAATCTCCCCTTCCTATTT
JMSF009D24+           GCGGGTCTGCTTCGAAAATCGAACGACCTTCGCCTCATTGAAAATCTCCCCTTCCTATTT
                      ____________________________________________________________
consensus             GCGGGTCTGCTTCGAAAATCGAACGACCTTCGCCTCATTGAAAATCTCCCCTTCCTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           TTGCATCAAACCAACAAAAACCTCCCCAGAAAGCTTCACTGTGTGGGTTCCTGAGTGAAG
JMSF003C04+           TTGCATCAAACCAACAAAAACCTCCCCAGAAAGCTTCACTGTGTGGGTTCCTGAGTGAAG
JMSF009D24+           TTGCATCAAACCAACAAAAACCTCCCCAGAAAGCTTCACTGTGTGGGTTCCTGAGTGAAG
                      ____________________________________________________________
consensus             TTGCATCAAACCAACAAAAACCTCCCCAGAAAGCTTCACTGTGTGGGTTCCTGAGTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF051J14+           GAGTCGAAATTTAGCT                                            
JMSF003C04+           GAGTCGAAATTTAGCTGTGGGTGCTCCGGAGAGAGTTCACAAACTGT             
JMSF009D24+           GAGTCGAAATTTAGCTGTGGGTGCTCCGGAGAGAGTTCACAAACTGTTATCAGATCACTC
                      ____________________________________________________________
consensus             GAGTCGAAATTTAGCTGTGGGTGCTCCGGAGAGAGTTCACAAACTGTTATCAGATCACTC