clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF001O23 | Sequence | 540 | 011917 (6) | emb|CDP01661.1| | 5e-47 | unnamed protein product [Coffea canephora] | 721 | 013591 (7) | emb|CBI28627.3| | 6e-111 | unnamed protein product [Vitis vinifera] |
JMFS024H05 | Sequence | 595 | 011917 (6) | ref|XP_009587166.1| | 2e-52 | PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis] | |||||
JMFS069H09 | Sequence | 612 | 011917 (6) | ref|XP_009587166.1| | 3e-60 | PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis] | |||||
JMFS081H04 | Sequence | 630 | 011917 (6) | ref|XP_009587166.1| | 2e-55 | PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis] | |||||
JMSF008J09 | Sequence | 373 | 011917 (6) | emb|CDP01661.1| | 5e-16 | unnamed protein product [Coffea canephora] | 695 | 013591 (7) | emb|CBI28627.3| | 2e-110 | unnamed protein product [Vitis vinifera] |
JMSF053K09 | Sequence | 648 | 011917 (6) | ref|XP_009587166.1| | 6e-56 | PREDICTED: probable receptor protein kinase TMK1 [Nicotiana tomentosiformis] | 928 | 013591 (7) | emb|CAN77178.1| | 8e-162 | hypothetical protein VITISV_021790 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFS069H09+ GCAGTGTTGAAGCA
____________________________________________________________
consensus GCAGTGTTGAAGCA
. : . : . : . : . : . :
JMFS069H09+ TTTCTAAGGCTCTCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
JMFF001O23+ CAGAT
JMFS024H05+ GCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
JMFS081H04+ TCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
JMSF053K09+ TCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
____________________________________________________________
consensus TTTCTAAGGCTCTCGGGGAGTTCCCAAGCAGCAAAAGGGTTGTTATCGATCTCAACAGAT
. : . : . : . : . : . :
JMFS069H09+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMFF001O23+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMFS024H05+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMFS081H04+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
JMSF053K09+ TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
____________________________________________________________
consensus TGCAAGGAAGACATGCCAACAAAGAAATCAGAAGGAATTGAAGTAAAGTGATTGTTGCTA
. : . : . : . : . : . :
JMFS069H09+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMFF001O23+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMFS024H05+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMFS081H04+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
JMSF053K09+ AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
____________________________________________________________
consensus AGCATTAACACTCGCAATGAACTCAACCCATTCAAGCTAGGCAAAGGCCCAGAAATATTG
. : . : . : . : . : . :
JMFS069H09+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMFF001O23+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMFS024H05+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMFS081H04+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
JMSF053K09+ TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
____________________________________________________________
consensus TTCCACTGGAGCTCTAAGCGTTGAAGTTGGGTGAGTTTAGAGAGGTCTGGAGGTAGAGTA
. : . : . : . : . : . :
JMFS069H09+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMFF001O23+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMFS024H05+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMFS081H04+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMSF053K09+ CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
JMSF008J09+ ATCTGAGCAACCC
____________________________________________________________
consensus CCTTGGAGGCTATTATGGCCGATTTGGATACGGATAACCCTCCTGTCATCTGAGCAACCC
. : . : . : . : . : . :
JMFS069H09+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMFF001O23+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMFS024H05+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMFS081H04+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMSF053K09+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
JMSF008J09+ ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
____________________________________________________________
consensus ACATGGTTCCACTTGCACGGATCCTGGCCGGACCAGCCCATATCTGAGGGTGGGTTTAGG
. : . : . : . : . : . :
JMFS069H09+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMFF001O23+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMFS024H05+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMFS081H04+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMSF053K09+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
JMSF008J09+ CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
____________________________________________________________
consensus CTCTTCTTGAGAGCAAACATCACAGAAGCATCGTCATTTTGGCCAGCTTGAGACACTGCA
. : . : . : . : . : . :
JMFS069H09+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMFF001O23+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMFS024H05+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMFS081H04+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMSF053K09+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
JMSF008J09+ TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
____________________________________________________________
consensus TTTACAAACAGTGAAGCAAAAATCCCAAGAAACACCAAAGCTGGAAGCTTTAGCCCAAGA
. : . : . : . : . : . :
JMFS069H09+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMFF001O23+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMFS024H05+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMFS081H04+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMSF053K09+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
JMSF008J09+ TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
____________________________________________________________
consensus TGAACTCTCATCTCGGTAAAAAGATTGGATTTTGAGAGGAAAAGTAAAGTCTTTATGGAG
. : . : . : . : . : . :
JMFS069H09+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAA
JMFF001O23+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAG
JMFS024H05+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
JMFS081H04+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
JMSF053K09+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
JMSF008J09+ AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
____________________________________________________________
consensus AAAGAGAAATACTTGAAGGCTAACAGCAGAAAAAGGCAGTGTGGTTTTCCAGGTTCAAGA
. : . : . : . : . : . :
JMFS024H05+ ACTTTTTCAGTAATGGAGGGTT
JMFS081H04+ ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTG
JMSF053K09+ ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTGTAAAACTAGGAAAACC
JMSF008J09+ ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTGTAAAACTAGGAAAACCCC
____________________________________________________________
consensus ACTTTTTCAGTAATGGAGGGTTTTGATGGGGGTTGGGTGTTGTAAAACTAGGAAAACCCC