Contig 011910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007H19Sequence369011910 (2)483005123 (8)emb|CDP06507.1|1e-81unnamed protein product [Coffea canephora]
JMSF033I16Sequence660011910 (2)ref|XP_004238013.1|1e-51PREDICTED: GATA transcription factor 24-like isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF033I16+                                                    CTTTGAGCAACCTCCTTCC
                      ____________________________________________________________
consensus                                                      CTTTGAGCAACCTCCTTCC
 
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JMSF033I16+           GGACAGTGTATCTAATTTTCTTATCATAACATCTCTCCTTCCTTTTCTCACGGAACCTAA
                      ____________________________________________________________
consensus             GGACAGTGTATCTAATTTTCTTATCATAACATCTCTCCTTCCTTTTCTCACGGAACCTAA
 
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JMSF033I16+           CCAGAGAGGCTATTCTTCTTGAAAGATTGGGGTGCTTTGGCATATCATCCTCAACCTTGC
                      ____________________________________________________________
consensus             CCAGAGAGGCTATTCTTCTTGAAAGATTGGGGTGCTTTGGCATATCATCCTCAACCTTGC
 
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JMSF033I16+           TATTCAAAGGAACATCTACAGAGGGCACAGCAGTAGGAATATCAGGTCCCCCCAAAAGCA
                      ____________________________________________________________
consensus             TATTCAAAGGAACATCTACAGAGGGCACAGCAGTAGGAATATCAGGTCCCCCCAAAAGCA
 
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JMSF033I16+           AGAGCACTGCTTGAACCTTCTCGGGAGTGACGGCAGGGAAGACATAGACTTCACCTTCAA
                      ____________________________________________________________
consensus             AGAGCACTGCTTGAACCTTCTCGGGAGTGACGGCAGGGAAGACATAGACTTCACCTTCAA
 
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JMSF033I16+           AAGCAAGAGTTAGTTCACTAGTCCTCGACGGCGCCACCACAACTCCGCCTTTCAGGCGTT
JMSF007H19+                                                              TCAGGCGTT
                      ____________________________________________________________
consensus             AAGCAAGAGTTAGTTCACTAGTCCTCGACGGCGCCACCACAACTCCGCCTTTCAGGCGTT
 
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JMSF033I16+           CAGTCAGAGAGCCGCCGCGGTGGTTCTTAGAGTTTACTCGACTGTACTCCTCCTCATCCA
JMSF007H19+           CAGTCAGAGAGCCGCCGCGGTGGTTCTTAGAGTTTACTCGACTGTACTCCTCCTCATCCA
                      ____________________________________________________________
consensus             CAGTCAGAGAGCCGCCGCGGTGGTTCTTAGAGTTTACTCGACTGTACTCCTCCTCATCCA
 
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JMSF033I16+           TAGTATCATCATCTTCGTACGTGCCGTTATCGTCATCCACGTCATCTAAACTTACGGCCG
JMSF007H19+           TAGTATCATCATCTTCGTACGTGCCGTTATCGTCATCCACGTCATCTAAACTTACGGCCG
                      ____________________________________________________________
consensus             TAGTATCATCATCTTCGTACGTGCCGTTATCGTCATCCACGTCATCTAAACTTACGGCCG
 
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JMSF033I16+           GAGGCGCGTGATCGCGGACGGGAATCGCCTGCAGTGGCCGGGGGTTCGCCGCCATCAACC
JMSF007H19+           GAGGCGCGTGATCGCGGACGGGAATCGCCTGCAGTGGCCGGGGGTTCGCCGCCATCAACC
                      ____________________________________________________________
consensus             GAGGCGCGTGATCGCGGACGGGAATCGCCTGCAGTGGCCGGGGGTTCGCCGCCATCAACC
 
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JMSF033I16+           AAACTTTCAAGTTCCAATCATCAACTTATTATTCTTCATGCAACTAAATCCACCTGCAGC
JMSF007H19+           AAACTTTCAAGTTCCAATCATCAACTTATTATTCTTCATGCAACTAAATCCACCTGCAGC
                      ____________________________________________________________
consensus             AAACTTTCAAGTTCCAATCATCAACTTATTATTCTTCATGCAACTAAATCCACCTGCAGC
 
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JMSF033I16+           TTGAATTCCAAGTAATCCTGTTTTCCTATATTATTTAATTCCTTTTAAGATTAAATTCAG
JMSF007H19+           TTGAATTCCAAGTAATCCTGTTTTCCTATATTATTTAATTCCTTTTAAGATTAAATTCAG
                      ____________________________________________________________
consensus             TTGAATTCCAAGTAATCCTGTTTTCCTATATTATTTAATTCCTTTTAAGATTAAATTCAG
 
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JMSF033I16+           GATTTCAGAGGAGAGTTCGAGAGTGAGGATAGAAGGAGAC                    
JMSF007H19+           GATTTCAGAGGAGAGTTCGAGAGTGAGGATAGAAGGAGACAGCGACGCAATGAACAAACC
                      ____________________________________________________________
consensus             GATTTCAGAGGAGAGTTCGAGAGTGAGGATAGAAGGAGACAGCGACGCAATGAACAAACC