Contig 011905:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF040K15-                                                                 GTTAC
                      ____________________________________________________________
consensus                                                                    GTTAC
 
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rJMSF006P13-               CAAAAGGAGTCTGACAAGATCATTGTAAAAACACNTTACATANATATGATGATAT
rJMFF040K15-          CNTANCAAAAGGAGTCTGACTAGATCATTGTAAAAACACATTACATATATATAATGATAT
                      ____________________________________________________________
consensus             CNTANCAAAAGGAGTCTGACTAGATCATTGTAAAAACACATTACATATATATGATGATAT
 
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rJMSF006P13-          GATGATCAGCTAAATGGTAGCACACAACAATACNAGATTTGATTGATACAAATGATGATC
rJMFF040K15-          GATGATCAGCTAAATGGTAGCACACAACAATACAAGATTTGATTGATACAAATGATGATC
                      ____________________________________________________________
consensus             GATGATCAGCTAAATGGTAGCACACAACAATACAAGATTTGATTGATACAAATGATGATC
 
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rJMSF006P13-          AGATCATATGGATAATATATGGCAGATCAAACGTTAGGGGTGCTTTGGAATGAACCACCN
rJMFF040K15-          AGATCATATGGATAATATATGGCAGATCAAACGTTAGGGGTGCTTTGGAATGAACCACCA
                      ____________________________________________________________
consensus             AGATCATATGGATAATATATGGCAGATCAAACGTTAGGGGTGCTTTGGAATGAACCACCA
 
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rJMSF006P13-          AGAGCTTTAACAGCCTGGGCTCGGAGTACTAGCTGATGATACACTGCTCCAGCAATTGCT
rJMFF040K15-          AGAGCTTTAACAGCCTGGGCTCGGAGTACTACCTGATGATACACTGCTCCAGCAATTGCT
                      ____________________________________________________________
consensus             AGAGCTTTAACAGCCTGGGCTCGGAGTACTAGCTGATGATACACTGCTCCAGCAATTGCT
 
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rJMSF006P13-          CCCAGCATTGGCCCAAC                                           
rJMFF040K15-          CCCAGCATTGGCCCAACCCAGAAAATCCAGTGGTCATCCCAGGCATGTTTGTTGTTGTGG
                      ____________________________________________________________
consensus             CCCAGCATTGGCCCAACCCAGAAAATCCAGTGGTCATCCCAGGCATGTTTGTTGTTGTGG
 
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rJMFF040K15-          ATCACAGCAGCGCCGAAACTCCTTGCTGGGTTGATGCCGGTGCCGGTGATGGGAATGGTG
                      ____________________________________________________________
consensus             ATCACAGCAGCGCCGAAACTCCTTGCTGGGTTGATGCCGGTGCCGGTGATGGGAATGGTG
 
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rJMFF040K15-          GCGACATGAGCCACAAACACAGCAAAACCAATGGGCAGTGGTGCCAATACCGGAACGTGA
                      ____________________________________________________________
consensus             GCGACATGAGCCACAAACACAGCAAAACCAATGGGCAGTGGTGCCAATACCGGAACGTGA
 
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rJMFF040K15-          GAGTCACGGGCGTTTCGTTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGAAAAAG
                      ____________________________________________________________
consensus             GAGTCACGGGCGTTTCGTTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGAAAAAG
 
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rJMFF040K15-          GTGGCGAGGATCTCAGCGACTAAGCCCACGCCCTTTGAGAAGCCAGGCTGGACGGTGTTG
                      ____________________________________________________________
consensus             GTGGCGAGGATCTCAGCGACTAAGCCCACGCCCTTTGAGAAGCCAGGCTGGACGGTGTTG
 
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rJMFF040K15-          GCGCCGCCGCCCACGGTGTCGAAGAAGTCCTTTGTTAAAGCTTTCACCAGTCCCACGCCA
                      ____________________________________________________________
consensus             GCGCCGCCGCCCACGGTGTCGAAGAAGTCCTTTGTTAAAGCTTTCACCAGTCCCACGCCA
 
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rJMFF040K15-          ACCACGGCTCCGAGGCACTGCGCCACCATGTACGCCACCGCCCGGATCAACGACACTTTC
JMFN035I02+                          CACTGCGCCACCATGTACGCCACCGCCCGGATCAACGACACTTTC
                      ____________________________________________________________
consensus             ACCACGGCTCCGAGGCACTGCGCCACCATGTACGCCACCGCCCGGATCAACGACACTTTC
 
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rJMFF040K15-          CTTGCTAGGAACAG                                              
JMFN035I02+           CTTGCTAGGAACAGCCCGAATGTCACCGCCGGGTTTATGTGCCCCCCAGAAATGCCGGCG
                      ____________________________________________________________
consensus             CTTGCTAGGAACAGCCCGAATGTCACCGCCGGGTTTATGTGCCCCCCAGAAATGCCGGCG
 
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JMFN035I02+           GTGCAGTAGACGAGGACGAAAATCATGCCGCCGAAGACCCAAGAAATGCCAAGCAAGCCA
JMSF006B11+                                                          GCCAAGCCAGCCA
                      ____________________________________________________________
consensus             GTGCAGTAGACGAGGACGAAAATCATGCCGCCGAAGACCCAAGAAATGCCAAGCCAGCCA
 
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JMFN035I02+           GCGCCCTTGCAGGGGTCGGGGGTGGCTTTGGTGCCGATGACGGTGGCGACGCTGACGTAG
JMSF006B11+           GCGCCCTTGCAGGGNTCGGGGGTGGCTTTGGTGCCGATGACGGTGGCGACGCTGACGTAG
                      ____________________________________________________________
consensus             GCGCCCTTGCAGGGGTCGGGGGTGGCTTTGGTGCCGATGACGGTGGCGACGCTGACGTAG
 
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JMFN035I02+           AGGAAGAGAAGGGTGGCGACGAACTCGGCGATGACGGCTCTGTAGAAGGACCA       
JMSF006B11+           AGGAAGAGAACGGTGGCGACGAACTCGGCGATGACGGCTCTGTAGAAGGACCATTTCTTA
                      ____________________________________________________________
consensus             AGGAAGAGAAGGGTGGCGACGAACTCGGCGATGACGGCTCTGTAGAAGGACCATTTCTTA
 
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JMSF006B11+           AGCTCATCCATGTCAAGCAACGCGGCAGGCGGCGGTTCAACGTAGTCCTTTGTCGACATC
                      ____________________________________________________________
consensus             AGCTCATCCATGTCAAGCAACGCGGCAGGCGGCGGTTCAACGTAGTCCTTTGTCGACATC
 
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JMSF006B11+           TTCAATTCGCCGGCGTATAGTATACTAGCAGATTAGACAAATAATATAATGGAGTGAGTC
                      ____________________________________________________________
consensus             TTCAATTCGCCGGCGTATAGTATACTAGCAGATTAGACAAATAATATAATGGAGTGAGTC