Contig 011904:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+                                                                    AAG
                      ____________________________________________________________
consensus                                                                      AAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           AATAAGTTCTCATCGGCCTCTTCATCGCACTCTTAGCACCCTGTTCCGGGGAACTTAAAC
                      ____________________________________________________________
consensus             AATAAGTTCTCATCGGCCTCTTCATCGCACTCTTAGCACCCTGTTCCGGGGAACTTAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           CCCTATGAGAATTCCTTATTTCTATAGCCTCGAAAAGCCTATTGATATCTTCCTCGATAA
                      ____________________________________________________________
consensus             CCCTATGAGAATTCCTTATTTCTATAGCCTCGAAAAGCCTATTGATATCTTCCTCGATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           GATACCTCTGCCCAATCTTCATCAGATGCTGCCTTCGCGAAATTTCATCTATTTCAGATG
                      ____________________________________________________________
consensus             GATACCTCTGCCCAATCTTCATCAGATGCTGCCTTCGCGAAATTTCATCTATTTCAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           CCAAACTTAAGTCCTCTATGGACTCCGTAATTTCACTAGTACCAGATAACGTGGCCATTG
                      ____________________________________________________________
consensus             CCAAACTTAAGTCCTCTATGGACTCCGTAATTTCACTAGTACCAGATAACGTGGCCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           TCCCTAGATGCATCTGAGCGAACTTAGAAGATTCCCCGAAACATTTCTTCAACCCATCTC
JMSF006A22+                                                                 CATCTC
                      ____________________________________________________________
consensus             TCCCTAGATGCATCTGAGCGAACTTAGAAGATTCCCCGAAACATTTCTTCAACCCATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           GGCAGAAGGATTTTGGAACGGAAGAATCCCGGATATCAAAAGCGAAATCACAAACCCTTC
JMSF006A22+           GGCAGAAGGATTTTGGAACGGAAGAATCCCGGATATCAAAAGCGAAATCACAAACCCTTC
                      ____________________________________________________________
consensus             GGCAGAAGGATTTTGGAACGGAAGAATCCCGGATATCAAAAGCGAAATCACAAACCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           CAAAGAGTTCACAACCATATTAAACATTAAGGAGCTCTCGAGCTTTCATCGATCGTGATC
JMSF006A22+           CAAAGAGTTCACAACCATATTAAACATTAAGGAGCTCTCGAGCTTTCATCGATCGTGATC
                      ____________________________________________________________
consensus             CAAAGAGTTCACAACCATATTAAACATTAAGGAGCTCTCGAGCTTTCATCGATCGTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           ACCGTGCAACATCCAATTCTACGTTGTTCCACTGTTGTTTTTCTCCCTTGCTTGCCGCTC
JMSF006A22+           ACCGTGCAACATCCAATTCTACGTTGTTCCACTGTTGTTTTTCTCCCTTGCTTGCCGCTC
                      ____________________________________________________________
consensus             ACCGTGCAACATCCAATTCTACGTTGTTCCACTGTTGTTTTTCTCCCTTGCTTGCCGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           GGTCGGTCGGGCCGTCTGTGCGTATCTAAATTCTAAATTGGCGCAAAAAGTAAAAGATTT
JMSF006A22+           GGTCGGTCGGGCCGTCTGTGCGTATCTAAATTCTAAATTGGCGCAAAAAGTAAAAGATTT
                      ____________________________________________________________
consensus             GGTCGGTCGGGCCGTCTGTGCGTATCTAAATTCTAAATTGGCGCAAAAAGTAAAAGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103A02+           TCAAGAAATTGAAATTCAAAGAAAGAGAGAGAGAGAGAAGAGCGA               
JMSF006A22+           TCAAGAAATTGAAATTCAAAGAAAGAGAGAGAGAGAGAAGAGCGAGCTGAGAAGGCTACC
                      ____________________________________________________________
consensus             TCAAGAAATTGAAATTCAAAGAAAGAGAGAGAGAGAGAAGAGCGAGCTGAGAAGGCTACC