Contig 011902:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O18Sequence243011902 (2)ref|XP_010318900.1|68.6PREDICTED: uridine-cytidine kinase C isoform X2 [Solanum lycopersicum]
JMSF005O18Sequence245011902 (2)ref|XP_010318900.1|68.6PREDICTED: uridine-cytidine kinase C isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF004O18+                                                                   AATA
JMSF005O18+                                                                  TAATA
                      ____________________________________________________________
consensus                                                                    TAATA
 
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JMSF004O18+           AATTGTCATGTTCGATTTTACCTGGTTAGCAACTGCTGGTGAATCGGGAGTTCTTACATC
JMSF005O18+           AATNGTCATGTTCGATTTTACCTGGTTAGCAACTGCTGGTGAATCGGGAGTTCTTACATC
                      ____________________________________________________________
consensus             AATTGTCATGTTCGATTTTACCTGGTTAGCAACTGCTGGTGAATCGGGAGTTCTTACATC
 
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JMSF004O18+           GTATCTCCTATTATTCACCGCAAGTTTTGTCAGTTTGCTAAGATGCTTTTCACGCTGCGT
JMSF005O18+           GTATCTCCTATTATTCACCGCAAGTTTTGTCAGTTTGCTAAGATGCTTTTCACGCTGCGT
                      ____________________________________________________________
consensus             GTATCTCCTATTATTCACCGCAAGTTTTGTCAGTTTGCTAAGATGCTTTTCACGCTGCGT
 
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JMSF004O18+           TGAAAATGAGAGCGACATACCGCTGCCCAAAATTTATACCAAGAGTTACTAACAAGAAAG
JMSF005O18+           TGAAAATGAGAGCGACATACCGCTGCCCAAAATTTATACCAAGAGTTACTAACAAGAAAG
                      ____________________________________________________________
consensus             TGAAAATGAGAGCGACATACCGCTGCCCAAAATTTATACCAAGAGTTACTAACAAGAAAG
 
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JMSF004O18+           CATCGTAAATTTAGCTCATATCTTACTCTACATTGTGATTTTAAAAACTCAAGACTTAC 
JMSF005O18+           CATCGTAAATTTAGCTCATATCTTACTCTACATTGTGATTTTAAAAACTCAAGACTTACC
                      ____________________________________________________________
consensus             CATCGTAAATTTAGCTCATATCTTACTCTACATTGTGATTTTAAAAACTCAAGACTTACC