Contig 011901:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN037I09Sequence596011901 (3)ref|XP_007043804.1|3e-31Light-regulated protein precursor, putative isoform 1 [Theobroma cacao] ref|XP_
JMSF005L10Sequence432011901 (3)ref|XP_011036168.1|1e-14PREDICTED: light-regulated protein [Populus euphratica]486011901 (3)ref|XP_010066447.1|1e-31PREDICTED: light-regulated protein-like [Eucalyptus grandis] gb|KCW64337.1| hypo

Alignment

This contig is upended


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rJMSF005L10-                         ACTCTCGNTTTAATACACTACATATATAAGTACAAGGATGGAGAA
JMFN037I09+                                                           AAGGATGGAGAA
                      ____________________________________________________________
consensus                            ACTCTCGNTTTAATACACTACATATATAAGTACAAGGATGGAGAA
 
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rJMSF005L10-          GAACNGACAGACTAGATCTTATATACCAGGNCTCTTTTAGTGAACTCCACTCAGGTTCTC
JMFN037I09+           GAACAGACAGACTAGATCTTATATACAAGGTCTCTTNTAGTGAACTCCACTCAGGTTCTC
                      ____________________________________________________________
consensus             GAACAGACAGACTAGATCTTATATACCAGGTCTCTTTTAGTGAACTCCACTCAGGTTCTC
 
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rJMSF005L10-          AGGTACTCNGGCTCACAGAATTCTCCTCCGAGATCATCACAAGCCTCTCCAAGAAATACC
JMFN037I09+           AGGTACTCAGGCTCACAGAATTCTCCTCCGAGATCATCACAAGCCTCTCCAAGAAATACC
                      ____________________________________________________________
consensus             AGGTACTCAGGCTCACAGAATTCTCCTCCGAGATCATCACAAGCCTCTCCAAGAAATACC
 
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rJMSF005L10-          GTCTTGGGATCATTGTACTCAAGATACTCCCTCTCTACCCCTTCTGATGCCGTCCTTGGC
JMFN037I09+           GTCTTGGGATCATTGTACTCAAGATACTCCCTCTCTACCCCTTCTGATGCCGTCCTTGGC
JMSF005L10+                                                           GCCGTCCTTGGC
                      ____________________________________________________________
consensus             GTCTTGGGATCATTGTACTCAAGATACTCCCTCTCTACCCCTTCTGATGCCGTCCTTGGC
 
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rJMSF005L10-          ATGTTGTTTCGTGGTGCTGAATCGAGCTTCACTTCAGGATACATTTCTACATTGCAAGCA
JMFN037I09+           ATGTTGTTTCGTGGTGCTGAATCGAGCTTCACTTCAGGATACATTTCTACATTGCAAGCA
JMSF005L10+           ATGTTGTTTCGTGGTGCTGAATCGAGCTTCACTTCAGGATACATTTCTACATTGCAAGCA
                      ____________________________________________________________
consensus             ATGTTGTTTCGTGGTGCTGAATCGAGCTTCACTTCAGGATACATTTCTACATTGCAAGCA
 
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rJMSF005L10-          TCTCCTCCAATTGTCTCGCAAGCTTCNGCTGGAAACACACTGCAATTCAAAAGCGGACCA
JMFN037I09+           TCTCCTCCAATTGTCTCGCAAGCTTCGGCTGGAAACACACTGCAATTCAAAAGCGGACCA
JMSF005L10+           TCTCCTCCAATTGTCTCGCAAGCTTCGGCTGGAAACACACTGCAATTCAAAAGCGGACCA
                      ____________________________________________________________
consensus             TCTCCTCCAATTGTCTCGCAAGCTTCGGCTGGAAACACACTGCAATTCAAAAGCGGACCA
 
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rJMSF005L10-          AGGTTAGTGTAGTAAAATGAGGGGATTAATTAAATGTTAGACCATGTGAATTTATGTACG
JMFN037I09+           AGGTTAGTGTAGTAAAATGAGGGGATTAATTAAATGTTAGACCATGTGAATTTATGTACG
JMSF005L10+           AGGTTAGTGTAGTAAAATGAGGGGATTAATTAAATGTTAGACCATGTGAATTTATGTACG
                      ____________________________________________________________
consensus             AGGTTAGTGTAGTAAAATGAGGGGATTAATTAAATGTTAGACCATGTGAATTTATGTACG
 
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rJMSF005L10-          CTGCTTACGAGGCCATGGAACTGTAATCGACCATCAAAGCTTCATTGGCAACTGCAGTGG
JMFN037I09+           CTGCTTACGAGGCCATGGAACTGTAATCGACCATCAAAGCTTCATTGGCAACTGCAGTGG
JMSF005L10+           CTGCTTACGAGGCCATGGAACTGTAATCGACCATCAAAGCTTCATTGGCAACTGCAGTGG
                      ____________________________________________________________
consensus             CTGCTTACGAGGCCATGGAACTGTAATCGACCATCAAAGCTTCATTGGCAACTGCAGTGG
 
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rJMSF005L10-          CTTTGATTGAGGGGCACAGGG                                       
JMFN037I09+           CTTTGATTGAGGGGCACAGGGAGGTTCTTGGAGCAGAAATGGAATGGAGCGGTGAAACTA
JMSF005L10+           CTTTGATTGAGGGGCACAGGGAGGTTCTTGGAGCAGAAATGGAATGGAGCGGTGAAACTA
                      ____________________________________________________________
consensus             CTTTGATTGAGGGGCACAGGGAGGTTCTTGGAGCAGAAATGGAATGGAGCGGTGAAACTA
 
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JMFN037I09+           AGGTTTTGGATGGTGTGACTCTGGGGAGAGTTGATGGTTGGAAGGAGAGAGCAGCCTGCA
JMSF005L10+           AGGTTTTGGATGGTGTGACTCTGGGGAGAGTTGATGGTTGGAAGGAGAGAGCAGCCTGCA
                      ____________________________________________________________
consensus             AGGTTTTGGATGGTGTGACTCTGGGGAGAGTTGATGGTTGGAAGGAGAGAGCAGCCTGCA
 
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JMFN037I09+           GCATTTTGAGATGATTGAGTGAGCAAGGAGTAGTTGGTTTGAAA                
JMSF005L10+           GCATTTTGAGATGATTGAGTGAGCAAGGAGTAGTTGGTTTGAAAGAAGAGAAGGAGGTTC
                      ____________________________________________________________
consensus             GCATTTTGAGATGATTGAGTGAGCAAGGAGTAGTTGGTTTGAAAGAAGAGAAGGAGGTTC