Contig 011897:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017K18Sequence375011897 (5)emb|CDP05796.1|4e-81unnamed protein product [Coffea canephora]
JMFN029G08Sequence598011897 (5)ref|XP_009611795.1|2e-126PREDICTED: trafficking protein particle complex subunit 3-like [Nicotiana tomen
JMSF005I10Sequence424011897 (5)ref|XP_006347669.1|9e-71PREDICTED: trafficking protein particle complex subunit 3-like [Solanum tuberos
JMSF015H01Sequence274011897 (5)ref|XP_006347669.1|3e-37PREDICTED: trafficking protein particle complex subunit 3-like [Solanum tuberos754011897 (5)ref|XP_009611795.1|5e-126PREDICTED: trafficking protein particle complex subunit 3-like [Nicotiana tomen

Alignment

This contig is upended


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rJMSF015H01-                             AAAGTCAATCAGGGAAGGAAAGAAACTAAAGTGTAATGTTT
                      ____________________________________________________________
consensus                                AAAGTCAATCAGGGAAGGAAAGAAACTAAAGTGTAATGTTT
 
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JMFN029G08+                                                                   CTGA
rJMSF015H01-          AAGTAATTATTAAGTAAGGACAAGCACAAAACTTGACAAATTGTATTTACATTATACTGA
                      ____________________________________________________________
consensus             AAGTAATTATTAAGTAAGGACAAGCACAAAACTTGACAAATTGTATTTACATTATACTGA
 
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JMFN029G08+           GCATAAAGAAGGCATGTTACTCATCATCCTTATAAGGGTACTCCTCGGGAACTGGCTTGA
rJMSF015H01-          GCATAAAGAAAGCATGTTACTCATCATCCTTATAAGGGTACTCCTAGGGAACTTGCTTGA
                      ____________________________________________________________
consensus             GCATAAAGAAGGCATGTTACTCATCATCCTTATAAGGGTACTCCTCGGGAACTTGCTTGA
 
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JMFN029G08+           GCAACTTCAACTGCAACTCGAACACATCATCCCCTCGAAGCATATCACGGATCCAAGTGA
JMFN017K18+                                                  GCATATCACGGATCCAAGTGA
rJMSF015H01-          GCAACTTCAACTGCAACTCGAACACATCATCCCCTCGAAGCATATCACGGATCCAAGTGA
                      ____________________________________________________________
consensus             GCAACTTCAACTGCAACTCGAACACATCATCCCCTCGAAGCATATCACGGATCCAAGTGA
 
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JMFN029G08+           CCTCAGTTTTCATTGACACCATCTCTAATGCCCCCCTGACAACTCCACGTAAGATATTGC
JMFN017K18+           CCTCAGTTTTCATTGACACCATCTGTAATGCCCCCCTGACAACTCCACTTAAGATATTGC
rJMSF015H01-          CCTCAGTTTTCATTGACACCATCTCTAATGCCCCCCTGACAACTCCACTTAAGATATTGC
                      ____________________________________________________________
consensus             CCTCAGTTTTCATTGACACCATCTCTAATGCCCCCCTGACAACTCCACTTAAGATATTGC
 
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JMFN029G08+           AATAATATAGACCTTGACAAGTATCAGGAAGCTCAACAAAGTCCACCAGTGGGTTGTCCT
JMFN017K18+           AATAATATAGACCTTGACAAGTATCAGGAAGCTCAACAAAGTCCACCAGTGGGTTGTCCT
rJMSF015H01-          AATAATATAGACCTTGACAAGTATCAGGAAGCTCAACAAAGTCCACCAGTGGGTTGTCCT
JMSF005I10+                                                                   TCCT
                      ____________________________________________________________
consensus             AATAATATAGACCTTGACAAGTATCAGGAAGCTCAACAAAGTCCACCAGTGGGTTGTCCT
 
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JMFN029G08+           CAAGAATTAGACTGCAGGTTGTTCCATCCGCATCCCAATTGGACACAGTTGCTGTGACAC
JMFN017K18+           CAAGAATTAGACTGCAGGTTGTTCCATCCGCATCCCAATTGGACACAGTTGCTGTGACAC
rJMSF015H01-          CAAGAATTAGACTGCAGGTTGTTCCATCCGCATCCCAATTGGACACAGTTGCTGTGACAC
JMSF005I10+           CAAGAATTAGACTGCAGGTTGTTCCATCCGCATCCCAATTGGACACAGTTGCTGTGACAC
                      ____________________________________________________________
consensus             CAAGAATTAGACTGCAGGTTGTTCCATCCGCATCCCAATTGGACACAGTTGCTGTGACAC
 
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JMFN029G08+           CCAAGAACATTTTAAAACCAACCTTGGCAATGACTTCAGCCGTTTCCTTGAAATCCACAC
JMFN017K18+           CCAAGAACATTTTAAAACCAACCTTGGCAATGACTTCAGCCGTTTCCTTGAAATCCACAC
rJMSF015H01-          CCAAGAACATTTTAAAACCAACCTTGGCAATGACTTCAGCCGTTTCCTTGAAATCCACAC
JMSF005I10+           CCAAGAACATTTTAAAACCAACCTTGGCAATGACTTCAGCCGTTTCCTTGAAATCCACAC
                      ____________________________________________________________
consensus             CCAAGAACATTTTAAAACCAACCTTGGCAATGACTTCAGCCGTTTCCTTGAAATCCACAC
 
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JMFN029G08+           ATCTAGAAACATTCGACTTTGCAAGGAACTCATCAATTAGCCGAACTCCAATGTTATACC
JMFN017K18+           ATCTAGAAACATTCGACTTTGCAAGGAACTCATCAATTAGCCGAACTCCAATGTTATACC
JMSF015H01+                              TGCAAGGAACTCATCAATTAGCCGAACTCCAATGTTATACC
rJMSF015H01-          ATCTAGAAACATTCGACTTTGCAAGGAACTCATCAATTAGCCGAACTCCAATGTTATACC
JMSF005I10+           ATCTAGAAACATTCGACTTTGCAAGGAACTCATCAATTAGCCGAACTCCAATGTTATACC
                      ____________________________________________________________
consensus             ATCTAGAAACATTCGACTTTGCAAGGAACTCATCAATTAGCCGAACTCCAATGTTATACC
 
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JMFN029G08+           CCATTTGATCAAGCTGCTTGTTGACTTCATCAACCTCCTCCAGATCGGTGAGCAGTTGAC
JMFN017K18+           CCATTTGATCAAGCTGCTTGTTGACTTCATCAACCTCCTCCAGATCGGTGAGCA      
JMSF015H01+           CCATTTGATCAAGCTGCTTGTTGACTTCATCAACCTCCTCCAGATCGGTGAGCAGTTGAC
rJMSF015H01-          CCATTTGATCAAGCTGCTTGTTGACTTCATCAACCTCCTCCAGATCGGTGAGCAGTTGAC
JMSF005I10+           CCATTTGATCAAGCTGCTTGTTGACTTCATCAACCTCCTCCAGATCGGTGAGCAGTTGAC
                      ____________________________________________________________
consensus             CCATTTGATCAAGCTGCTTGTTGACTTCATCAACCTCCTCCAGATCGGTGAGCAGTTGAC
 
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JMFN029G08+           GCACGATCGCGCCATACGTTAGAGTGAAGAGCTCCGCGTTCACTCGCTCTACGTTGGCGA
JMSF015H01+           GCACGATCGCGCCATACGTTAGAGTGAAGAGCTCCGCGTTCACTCGCTCTACGTTGGCGA
rJMSF015H01-          GCACGATCGCGCCATACGTTAGAGTGAAGAGCTCCGCGTTCACTCGCTCTACGTTGGCGA
JMSF005I10+           GCACGATCGCGCCATACGTTAGAGTGAAGAGCTCCGCGTTCACTCGCTCTACGTTGGCGA
                      ____________________________________________________________
consensus             GCACGATCGCGCCATACGTTAGAGTGAAGAGCTCCGCGTTCACTCGCTCTACGTTGGCGA
 
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JMFN029G08+           AAATGGCGTCTCCAGATCTGGGGGCGACGGGAGCCATGGAAGCCTTCGATCCGA      
JMSF015H01+           AAATGGCGTCTCCAGATCTGGGGGCGACGGGAGCCATGGAAGCCTTCGATCCGAGCTGCT
rJMSF015H01-          AAATGGCGTCTCCAGATCTGGGGGCGACGGGAGCCATGGAAGCCTTCGATCCGAGCTGCT
JMSF005I10+           AAATGGCGTCTCCAGATCTGGGGGCGACGGGAGCCATGGAAGCCTTCGATCCGAGCTGCT
                      ____________________________________________________________
consensus             AAATGGCGTCTCCAGATCTGGGGGCGACGGGAGCCATGGAAGCCTTCGATCCGAGCTGCT
 
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JMSF015H01+           ACTCTTAATTTAGTACAAACTACAAAGTATGTGGGATTTCGAGTGTGCTTTC        
rJMSF015H01-          ACTCTTAATTTAGTACAAACTACAAAGTATGTGGGATTTCGAGTGTGCTTTC        
JMSF005I10+           ACTCTTAATTTAGTACAAACTACAAAGTATGTGGGATTTCGAGTGTGCTTTCGACTTCCG
                      ____________________________________________________________
consensus             ACTCTTAATTTAGTACAAACTACAAAGTATGTGGGATTTCGAGTGTGCTTTCGACTTCCG