Contig 011896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005H17Sequence432011896 (2)ref|XP_004238422.1|3e-21PREDICTED: mast cell carboxypeptidase A [Solanum lycopersicum]377001354 (4)emb|CDO98696.1|1e-17unnamed protein product [Coffea canephora]
JMSF030H11Sequence658011896 (2)ref|XP_004238422.1|1e-72PREDICTED: mast cell carboxypeptidase A [Solanum lycopersicum]778006773 (3)ref|XP_004238422.1|4e-81PREDICTED: mast cell carboxypeptidase A [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF030H11+ TTCACAAAGCTC
                      ____________________________________________________________
consensus TTCACAAAGCTC
 
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JMSF030H11+ CCCNTCCTCTACAAGTTTGCGCCCATTCACATTTTCCATTGGAACAATCTTAATAACAAG
                      ____________________________________________________________
consensus CCCNTCCTCTACAAGTTTGCGCCCATTCACATTTTCCATTGGAACAATCTTAATAACAAG
 
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JMSF030H11+ TTTGTCCAAAGTATTATTAAGTGTAAGTGGGTATTGCTTTGGTAAGAATTCTTCATCGCT
                      ____________________________________________________________
consensus TTTGTCCAAAGTATTATTAAGTGTAAGTGGGTATTGCTTTGGTAAGAATTCTTCATCGCT
 
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JMSF030H11+ TAAAATAGAAAGAATCCGTAATGCAAGCTCGGTTGTTATGAGCTCCCTCCCATGCTGCCC
                      ____________________________________________________________
consensus TAAAATAGAAAGAATCCGTAATGCAAGCTCGGTTGTTATGAGCTCCCTCCCATGCTGCCC
 
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JMSF030H11+ AAAAGTAAGGAGGATTCTAACTTTTGATCTATCATCGCAGTCTTTCCCACCTTGGCAATA
                      ____________________________________________________________
consensus AAAAGTAAGGAGGATTCTAACTTTTGATCTATCATCGCAGTCTTTCCCACCTTGGCAATA
 
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JMSF030H11+ TGTAACTATAGTTGTATCAGCATGATACCCTCTATTCTTAGTAGAAAGGGTTTCAATAAA
JMSF005H17+ AAA
                      ____________________________________________________________
consensus TGTAACTATAGTTGTATCAGCATGATACCCTCTATTCTTAGTAGAAAGGGTTTCAATAAA
 
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JMSF030H11+ GAGTTTGTCTGGGTGTCGATGCACCAACGACTCAATTTCTTCCAGCAAAGCCCCACTGGT
JMSF005H17+ GAGTTTGTCTGGGTGTCGATGCACCAACGACTCAATTTCTTCCAGCAAAGCCCCACTGGT
                      ____________________________________________________________
consensus GAGTTTGTCTGGGTGTCGATGCACCAACGACTCAATTTCTTCCAGCAAAGCCCCACTGGT
 
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JMSF030H11+ ATGATAAAGATCGCGATTGATGGGCGTCACAGAAGCTTGGCCCTTGGTGGCATTACTTTT
JMSF005H17+ ATGATAAAGATCGCGATTGATGGGCGTCACAGAAGCTTGGCCCTTGGTGGCATTACTTTT
                      ____________________________________________________________
consensus ATGATAAAGATCGCGATTGATGGGCGTCACAGAAGCTTGGCCCTTGGTGGCATTACTTTT
 
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JMSF030H11+ GGCATTGACATTAGAAAAATAAGCAAAGGATGATAATAGGAAGAGAAGAGACAAAAAGGA
JMSF005H17+ GGCATTGACATTAGAAAAATAAGCAAAGGATGATAATAGGAAGAGAAGAGACAAAAAGGA
                      ____________________________________________________________
consensus GGCATTGACATTAGAAAAATAAGCAAAGGATGATAATAGGAAGAGAAGAGACAAAAAGGA
 
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JMSF030H11+ GATCGACGGAGAGGAGAAGAGAGAATAGAGGCGGCGTTGGCGACGGCGGCCCATCTAAAT
JMSF005H17+ GATCGACGGAGAGGAGAAGAGAGAATAGAGGCGGCGTTGGCGACGGCGGCCCATCTAAAT
                      ____________________________________________________________
consensus GATCGACGGAGAGGAGAAGAGAGAATAGAGGCGGCGTTGGCGACGGCGGCCCATCTAAAT
 
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JMSF030H11+ CTGGAGATTGGTGAAGGGAAAGGGAAGAAGAACAAGGACAGCAGCTGTCGTCAGCGTGCT
JMSF005H17+ CTGGAGATTGGTGAAGGGAAAGGGAAGAAGAACAAGGACAGCAGCTGTCGTCAGCGTGCT
                      ____________________________________________________________
consensus CTGGAGATTGGTGAAGGGAAAGGGAAGAAGAACAAGGACAGCAGCTGTCGTCAGCGTGCT
 
. : . : . : . : . : . :
JMSF030H11+ CATTTGAATCAACAGTACAATGTCGTGTCGGGACTCGCAAAATT
JMSF005H17+ CATTTGAATCAACAGTACAATGTCGTGTCGGGACTCGCAAAATTTGAAACAGCAAATGCC
                      ____________________________________________________________
consensus CATTTGAATCAACAGTACAATGTCGTGTCGGGACTCGCAAAATTTGAAACAGCAAATGCC