Contig 011893:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005C20Sequence377011893 (5)
JMSF009P02Sequence319011893 (5)770009891 (5)
JMSF010G01Sequence408011893 (5)762009891 (5)
JMSF023D15Sequence708011893 (5)636009891 (5)
JMSF048C02Sequence706011893 (5)739009891 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF023D15+ ATAACATTNGG
                      ____________________________________________________________
consensus ATAACATTNGG
 
. : . : . : . : . : . :
JMSF023D15+ TTGTTTTACCNNTAAAAATTCTGTACAGTCCTTACAAACAGAATTCTGCTTAAAGACATG
                      ____________________________________________________________
consensus TTGTTTTACCNNTAAAAATTCTGTACAGTCCTTACAAACAGAATTCTGCTTAAAGACATG
 
. : . : . : . : . : . :
JMSF023D15+ CGGAAGATTACTTCATCAACAGTTATTGGTGGAAAAAGAAAAATCAGCACTAAACATTTT
                      ____________________________________________________________
consensus CGGAAGATTACTTCATCAACAGTTATTGGTGGAAAAAGAAAAATCAGCACTAAACATTTT
 
. : . : . : . : . : . :
JMSF023D15+ TTAAGCTACCTATTTCTATGGATCTTCATGAGCATGTTCAAACTGAAAATCAATTGCTAG
JMSF048C02+ TTCATGAGCATGTTCAAACTGAAAATCAATTGCTAG
                      ____________________________________________________________
consensus TTAAGCTACCTATTTCTATGGATCTTCATGAGCATGTTCAAACTGAAAATCAATTGCTAG
 
. : . : . : . : . : . :
JMSF023D15+ ATTGCTACCTTTATGCCTCAGGAATTAGTCTGGAATAATGTAAAAAAAGTAAGATAAAAA
JMSF048C02+ ATTGCTACCTTTATGCCTCAGGAATTAGTTTGGAATAATGTAAAAAAAGTAAGATAAAAA
                      ____________________________________________________________
consensus ATTGCTACCTTTATGCCTCAGGAATTAGTTTGGAATAATGTAAAAAAAGTAAGATAAAAA
 
. : . : . : . : . : . :
JMSF023D15+ ATAACCTAAAATCAAAACTTAGCTATTTTGCCCCTTTGTATGGTGATTTGTCCTTTCGAT
JMSF048C02+ AAGACCTAAAATTAAAACTCAGCTATTTTGCCCCTTTGTATGGTGATTTGTCCTTTCGAT
                      ____________________________________________________________
consensus ATGACCTAAAATTAAAACTTAGCTATTTTGCCCCTTTGTATGGTGATTTGTCCTTTCGAT
 
. : . : . : . : . : . :
JMSF023D15+ ATGTATATGAAGATTTCAATCAGAAGTCTAAAAAAATGTAAATCACACAAACAATAATAA
JMSF048C02+ ATGTATATGAAGATTTCAATCAGAAGTCTAAAATAATGTAAACCACACAAACAATAATAA
                      ____________________________________________________________
consensus ATGTATATGAAGATTTCAATCAGAAGTCTAAAATAATGTAAATCACACAAACAATAATAA
 
. : . : . : . : . : . :
JMSF023D15+ ATGAGTAAAATTAAACATTTGAATTTCACAAATTAACACAGATTTATACACATTAGATAC
JMSF048C02+ ATGAGTAAAATTAAACATTTGAATTTCACAAATTAACACAGATTTATACACATTAGATAC
                      ____________________________________________________________
consensus ATGAGTAAAATTAAACATTTGAATTTCACAAATTAACACAGATTTATACACATTAGATAC
 
. : . : . : . : . : . :
JMSF023D15+ CTGGCAAAAAAATAACTTATCTGGTAGATTTCATTCGATGTTTGAGTTGCTCTTTTTAGT
JMSF010G01+ CTGGTAGATTTCATTCGATGTTTGAGTTGCTCTTCTTAGT
JMSF048C02+ CTGGCAAAAAAATAACTTATCTGGTAGATTTCATTCGATGTTTGAGTTGCTCTTCTTAGT
                      ____________________________________________________________
consensus CTGGCAAAAAAATAACTTATCTGGTAGATTTCATTCGATGTTTGAGTTGCTCTTCTTAGT
 
. : . : . : . : . : . :
JMSF023D15+ TCGAACAGGTGATTTAAAGCAACAGAGATCCTTCCGTTTCGATTCGTACTCGGGTTTCCA
JMSF010G01+ TCGAACAGGTGATTTAAAGCAACAGAGATCCTTCCGTTTCGATTCGTACTCGGGTTTCCA
JMSF048C02+ TCGAACAGGTGATTTAAAGCAACAGAGATCCTTCCGTTTCGATTCGTACTCGGGTTTCCA
JMSF009P02+ TTTCCA
JMSF005C20+ TCGTACTCGGGTTTCCA
                      ____________________________________________________________
consensus TCGAACAGGTGATTTAAAGCAACAGAGATCCTTCCGTTTCGATTCGTACTCGGGTTTCCA
 
. : . : . : . : . : . :
JMSF023D15+ GAATATTGCCGAACAGAAAAATCGAGGAATGAAACAAATTGCGACCGATCTAAAACTACA
JMSF010G01+ GAATATTGCCGAACAGAACAATCGAGGAATGAAACAAATTGCGACCGATCTAAAACTACA
JMSF048C02+ GAATATTGCCGAACAGAACAATCGAGGAATGAAACAAATTGCGACCGATCTAAAACTACA
JMSF009P02+ GAATATTGCCGAACAGAACAATCGAGGANTGAAACAAATTGCGACCGATCTAAAACTACA
JMSF005C20+ GAATATTGCCGAACAGAACAATCGAGGAATGAAACAAATTGCGACCGATCTAAAACTACA
                      ____________________________________________________________
consensus GAATATTGCCGAACAGAACAATCGAGGAATGAAACAAATTGCGACCGATCTAAAACTACA
 
. : . : . : . : . : . :
JMSF023D15+ CTTTCAGATCGAGGAGTACTGCAAGGAGAAATGAAGAACCAATCACACAGTACGAAAGAG
JMSF010G01+ CTTTCAGATCGAGGAGTACTGCAAGGAGAAATGAAGAACCAATCACACAGTACGAAAGCG
JMSF048C02+ CTTTCAGATCGAGGAGTACTGCAAGGAGAAATGAAGAACCAATCACACAGTACGAAAGCG
JMSF009P02+ CTTTCAGATCGAGGAGTACTGCAAGGAGAAATGAAGAACCAATCACACAGTACGAAAGCG
JMSF005C20+ CTTTCAGATCGAGGAGTACTGCAAGGAGAAATGAAGAACCAATCACACAGTACGAAAGCG
                      ____________________________________________________________
consensus CTTTCAGATCGAGGAGTACTGCAAGGAGAAATGAAGAACCAATCACACAGTACGAAAGCG
 
. : . : . : . : . : . :
JMSF023D15+ AGGACGATCCGACTGAGATTGGCGAGAACCAGCC
JMSF010G01+ AGGACGATCCGACTGAGATTGGCGAGAACCAGCCTTCTATATGATGAAGCTCATTCAGAA
JMSF048C02+ AGGACGATCCGACTGAGATTGGCGAGAACCAGCCTTCTATATGATGAAGCTCATTCAGAA
JMSF009P02+ AGGACGATCCGACTGAGATTGGCGAGAACCAGCCTTCTATATGATGAAGCTCATTCAGAA
JMSF005C20+ AGGACGATCCGACTGAGATTGGCGAGAACCAGCCTTCTATATGATGAAGCTCATTCAGAA
                      ____________________________________________________________
consensus AGGACGATCCGACTGAGATTGGCGAGAACCAGCCTTCTATATGATGAAGCTCATTCAGAA
 
. : . : . : . : . : . :
JMSF010G01+ CTATATGATTAATGTTGTTTTCAACAGATGGTAGCCAGACTCAGCCGGATGTAGAGAAGA
JMSF048C02+ CTATATGATTAATGTTGTTTTCAACAGATGGTAGCCAGACTCAGCCGGATGTAGAGAAGA
JMSF009P02+ CTATATGATTAATGTTGTTTTCAACAGATGGTAGCCAGACTCAGCCGGATGTAGAGAAGA
JMSF005C20+ CTATATGATTAATGTTGTTTTCAACAGATGGTAGCCAGACTCAGCCGGATGTAGAGAAGA
                      ____________________________________________________________
consensus CTATATGATTAATGTTGTTTTCAACAGATGGTAGCCAGACTCAGCCGGATGTAGAGAAGA
 
. : . : . : . : . : . :
JMSF010G01+ CGAAAGAGACAGAGAAGAGAAGATAGAGACAAGAAGCAATTTAGATCTGCCGAGTCTTTC
JMSF048C02+ CGAAAGAGACAGAGAAGAGAAGATAGAGACAAGAAGCAATTTAGATCTGCCGAGTCTTTC
JMSF009P02+ CGAAAGAGACAGAGAAGAGAAGATAGAGACAAGAAGCAATTTAGATCTGCCGAGTCTTTC
JMSF005C20+ CGAAAGAGACAGAGAAGAGAAGATAGAGACAAGAAGCAATTTAGATCTGCCGAGTCTTTC
                      ____________________________________________________________
consensus CGAAAGAGACAGAGAAGAGAAGATAGAGACAAGAAGCAATTTAGATCTGCCGAGTCTTTC
 
. : . : . : . : . : . :
JMSF010G01+ GTTCAAT
JMSF048C02+ GTTCAAT
JMSF009P02+ GTTCAAT
JMSF005C20+ GTTCAATGTACTAGAGATTCCCACCACACCCGCCTTTTTTATTTTCTTTTTCATCTCCCC
                      ____________________________________________________________
consensus GTTCAATGTACTAGAGATTCCCACCACACCCGCCTTTTTTATTTTCTTTTTCATCTCCCC