Contig 011890:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004L21Sequence300011890 (2)emb|CDP07055.1|3e-17unnamed protein product [Coffea canephora]426011890 (2)emb|CDP07055.1|2e-34unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF004L21- TTGGACAATCNGATCTATT
                      ____________________________________________________________
consensus TTGGACAATCNGATCTATT
 
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rJMSF004L21- CACTTGNATATTTAATTTGAACNTAAAAGCTCTTGAGTTGTACAAGAACTCCAATCTACT
                      ____________________________________________________________
consensus CACTTGNATATTTAATTTGAACNTAAAAGCTCTTGAGTTGTACAAGAACTCCAATCTACT
 
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rJMSF004L21- TTTCCAATATATTGCTTGGCAAGAATCCTCTCCAATTCAATTGGCCTGCAAGAANGAATG
                      ____________________________________________________________
consensus TTTCCAATATATTGCTTGGCAAGAATCCTCTCCAATTCAATTGGCCTGCAAGAANGAATG
 
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rJMSF004L21- AGTGCGCCTTCATGTTCGAACCCATATTCCTCTGCAGCTTTTTCCAACAGCCTTAANAAT
                      ____________________________________________________________
consensus AGTGCGCCTTCATGTTCGAACCCATATTCCTCTGCAGCTTTTTCCAACAGCCTTAANAAT
 
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rJMSF004L21- GAAGGGTGCATTAAACAACTTAGAGGAAGAATCAGTCTCTTGCGCTTCTCATTGTCCACC
JMSF004L21+ GAAGGGTGCATTAAACAACTTAGAGGAAGAATCAATCTCTTGCGCTTCTCATTGTCCACC
                      ____________________________________________________________
consensus GAAGGGTGCATTAAACAACTTAGAGGAAGAATCAGTCTCTTGCGCTTCTCATTGTCCACC
 
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rJMSF004L21- TCCATCACCGCGAAATGCCCTTCTTTAACGTCATTAGACACATCCTTGGAGTTCTCGAAC
JMSF004L21+ TCCATCACCGCGAAATGCCCTTCTTTAACGTCATTAGACACATCCTTGGAGTTCTCGAAC
                      ____________________________________________________________
consensus TCCATCACCGCGAAATGCCCTTCTTTAACGTCATTAGACACATCCTTGGAGTTCTCGAAC
 
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rJMSF004L21- TCGTCAAAATCATTCAGGGATGACCTCTGATGATCTGCTAAAAAACTCTTTTGAAACATT
JMSF004L21+ TCGTCAAAATCATTCAGGGATGACCTCTGATGATCTGCTAAAAAACTCTTTTGAAACATT
                      ____________________________________________________________
consensus TCGTCAAAATCATTCAGGGATGACCTCTGATGATCTGCTAAAAAACTCTTTTGAAACATT
 
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rJMSF004L21- TGTACCATTGTCTTGAGGTTCATGCCATTCTTTTTCTTCCCGTTTGA
JMSF004L21+ TGTACCATTGTCTTGAGGTTCATGCCATTCTTTTTCTTCCCGTTTGATCTGGACAACTTT
                      ____________________________________________________________
consensus TGTACCATTGTCTTGAGGTTCATGCCATTCTTTTTCTTCCCGTTTGATCTGGACAACTTT
 
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JMSF004L21+ GCCATGATCTTTTCGTTTCTTTTGTAGTGAATGAAGAAAGAATTGAATTGAGCTGAGGTC
                      ____________________________________________________________
consensus GCCATGATCTTTTCGTTTCTTTTGTAGTGAATGAAGAAAGAATTGAATTGAGCTGAGGTC