Contig 011885:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS156C12Sequence618011885 (6)ref|XP_010266968.1|3e-55PREDICTED: LMBR1 domain-containing protein 2 homolog A-like isoform X2 [Nelumbo
JMSF002H19Sequence385011885 (6)ref|XP_009589378.1|2e-31PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Nicotiana tomentos126018095
JMSF004B06Sequence278011885 (6)
JMSF007D03Sequence292011885 (6)
JMSF047G12Sequence685011885 (6)ref|XP_009787283.1|1e-66PREDICTED: LMBR1 domain-containing protein 2 homolog A [Nicotiana sylvestris]812008654 (3)ref|XP_004240022.1|4e-39PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Solanum lycopersic
JMSF052A15Sequence705011885 (6)ref|XP_009787283.1|7e-56PREDICTED: LMBR1 domain-containing protein 2 homolog A [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF047G12+             CGAAACCAAGAAGAAATGCACCAGTTACCAGTCCAAAAGTATTGGAGCATGCCATAGC
JMSF052A15+                                            TCCAAAAGTATTGGAGCATGCCATAGC
                      ____________________________________________________________
consensus               CGAAACCAAGAAGAAATGCACCAGTTACCAGTCCAAAAGTATTGGAGCATGCCATAGC
 
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JMSF047G12+           AAAACCTAGTAGCTTTACACCCCTAATTTTCTGCATACTAATTAGGAGAATAAGCCCAAA
JMFS156C12+                                                         AGAATAAGCCCAAA
JMSF052A15+           AAAACCTAGTAGCTTTACACCCCTAATTTTCTGCATACTAATTAGGAGAATAAGCCCAAA
                      ____________________________________________________________
consensus             AAAACCTAGTAGCTTTACACCCCTAATTTTCTGCATACTAATTAGGAGAATAAGCCCAAA
 
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JMSF047G12+           AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
JMFS156C12+           AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
JMSF052A15+           AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
                      ____________________________________________________________
consensus             AAGACCAATGGACCCCACAATTAAATAGAACACCAAATTTACATGTATGCTCGTCTTCAA
 
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JMSF047G12+           TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
JMFS156C12+           TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
JMSF052A15+           TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
                      ____________________________________________________________
consensus             TCTTTCTACTAAAGAAAAATCTCCAGCATCTTCAAAACCCTGAATAAGCGGAACCACAAG
 
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JMSF047G12+           CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
JMFS156C12+           CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
JMSF052A15+           CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
                      ____________________________________________________________
consensus             CCATGTGAGTAGAAATGTACTCCAATATGACCAGCTCCAGAAGAATGAGATGCCTCCATT
 
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JMSF002H19+             CATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
JMSF047G12+           ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
JMFS156C12+           ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
JMSF052A15+           ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
                      ____________________________________________________________
consensus             ATCATGTCCAATTATTGTCGTCCAAACATCGGCCGGGACTAGAATAATCATGGAGATGGA
 
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JMSF002H19+           GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
JMSF047G12+           GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
JMFS156C12+           GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
JMSF052A15+           GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
                      ____________________________________________________________
consensus             GCAAAACCAAGTATAGCCGACAGTGAAGAAGACATATCTAGGCACGTCTGGACCAGCAAA
 
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JMSF002H19+           GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMSF047G12+           GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMFS156C12+           GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMSF052A15+           GTATTTGAGAATCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
JMSF007D03+                                     CAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
                      ____________________________________________________________
consensus             GTATTTGAGAGTCAACACCACCATTCCAAGGGTCAGAGGCAGCGAGATCAGATAGAACAC
 
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JMSF002H19+           CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF047G12+           CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMFS156C12+           CCACATCTTCCTCCTCCTCCTCTCTGGAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF052A15+           CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF007D03+           CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
JMSF004B06+                                 TCTGTAACGGATNGTATGTATATGTCTGTGTATTTTGG
                      ____________________________________________________________
consensus             CCACATCTTCCTCCTCCTCCTCTCTGTAACGGATTGTATGTATATGTCTGTGTATTTTGG
 
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JMSF002H19+           TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF047G12+           TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMFS156C12+           TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF052A15+           TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF007D03+           TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
JMSF004B06+           TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
                      ____________________________________________________________
consensus             TATGCGTACGGTTCACCTGTAGCCTGTAGGAGGTTGATCGGAGATTATTCGGAGGTTCTT
 
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JMSF002H19+           CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF047G12+           CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMFS156C12+           CTGTCCTGTTATGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF052A15+           CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF007D03+           CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
JMSF004B06+           CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
                      ____________________________________________________________
consensus             CTGTCCTGTTCTGTGCTGATCGCTGCAATTGCCGATTAATCGGTAGCTCGGTGATTGCAG
 
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JMSF002H19+           CTAATTTGCGCCACCTCTGCACCT                                    
JMSF047G12+           CTAATTTGCGCCACCTCTGCACCTCC                                  
JMFS156C12+           CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
JMSF052A15+           CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
JMSF007D03+           CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
JMSF004B06+           CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
                      ____________________________________________________________
consensus             CTAATTTGCGCCACCTCTGCACCTCCGTCGTCCTACCGTGCGCCCTCAGACGACGTTATA
 
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JMFS156C12+           GGAG                                                        
JMSF052A15+           GGAGGCGTCTCACTGTT                                           
JMSF007D03+           GGAGGCGTCTCACTGTT                                           
JMSF004B06+           GGAGGCGTCTCACTGTTGTCTTTGCGATGACGTGCCGTGGCAAATTGATAGCTCCATTTC
                      ____________________________________________________________
consensus             GGAGGCGTCTCACTGTTGTCTTTGCGATGACGTGCCGTGGCAAATTGATAGCTCCATTTC