| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001B14 | Sequence | 264 | 011882 (4) | ref|XP_009610482.1| | 7e-18 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana toment | 728 | 011302 (4) | ref|XP_009784195.1| | 2e-41 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves |
| JMSF003N18 | Sequence | 345 | 011882 (4) | ref|XP_009784195.1| | 1e-32 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves | 703 | 011302 (4) | ref|XP_009784195.1| | 2e-34 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves |
| JMSF014N11 | Sequence | 178 | 011882 (4) | 733 | 011302 (4) | ref|XP_009784195.1| | 3e-42 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves | |||
| JMSF019H06 | Sequence | 575 | 011882 (4) | ref|XP_004245129.1| | 1e-81 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Solanum lycopers | 734 | 011302 (4) | ref|XP_009784195.1| | 8e-41 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves |
This contig is upended
. : . : . : . : . : . :
JMSF019H06+ TGAGGAAGAACCCGGAGCTGATCGGGAGTGTGAGAGAAG
____________________________________________________________
consensus TGAGGAAGAACCCGGAGCTGATCGGGAGTGTGAGAGAAG
. : . : . : . : . : . :
JMSF019H06+ AAACAGACACGGCGGCGGCACTGGGTCCCATCCTTGCAGGGCTGCGTGCGGTAACGCGCC
____________________________________________________________
consensus AAACAGACACGGCGGCGGCACTGGGTCCCATCCTTGCAGGGCTGCGTGCGGTAACGCGCC
. : . : . : . : . : . :
JMSF019H06+ GGGTGGAGCCAGCACTCGAACACGCCGTGCGCGTACTCACACGCGTCGCCGTTCTTACAC
____________________________________________________________
consensus GGGTGGAGCCAGCACTCGAACACGCCGTGCGCGTACTCACACGCGTCGCCGTTCTTACAC
. : . : . : . : . : . :
JMSF019H06+ TGCCCTTTCCTGAACTCCGGGCACGCCGTCCCGGAATAGTGAAACTTCCGGGGGTCCCGG
____________________________________________________________
consensus TGCCCTTTCCTGAACTCCGGGCACGCCGTCCCGGAATAGTGAAACTTCCGGGGGTCCCGG
. : . : . : . : . : . :
JMSF019H06+ CGGCGAGCCTTCTCGCCGGGATGCGCGAACGGGCACTCAGTCCAGTCATGCGACCTCCCG
____________________________________________________________
consensus CGGCGAGCCTTCTCGCCGGGATGCGCGAACGGGCACTCAGTCCAGTCATGCGACCTCCCG
. : . : . : . : . : . :
JMSF019H06+ CGCGCGCACTTCCTCACCTTGAACTCATACATACGGAACTGATCGGACGAGAACGCGTCG
JMSF003N18+ TCACCTTGAACTCATACATACGGAACTGATCGGACGAGAACGCGTCG
____________________________________________________________
consensus CGCGCGCACTTCCTCACCTTGAACTCATACATACGGAACTGATCGGACGAGAACGCGTCG
. : . : . : . : . : . :
JMSF019H06+ ACAGGAACGTCAAGCTCGTCGGAGTCCGGAACGACGTCGTTCACATTCGACGGAAGGTAA
JMSF001B14+ ACGTCGTTCACATTCGACGGAAGGT-A
JMSF003N18+ ACAGGAACGTCAAGCTCGTCGGAGTCCGGAACGACGTCGTTCACATTCGACGGAAGGT-A
____________________________________________________________
consensus ACAGGAACGTCAAGCTCGTCGGAGTCCGGAACGACGTCGTTCACATTCGACGGAAGGT-A
. : . : . : . : . : . :
JMSF019H06+ ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
JMSF014N11+ C
JMSF001B14+ ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
JMSF003N18+ ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
____________________________________________________________
consensus ACGCTGCAGCGCCGTCAAGGCGTCGAACCCAGAGTCAGGACTGACGGCGCTGGCATTGCC
. : . : . : . : . : . :
JMSF019H06+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
JMSF014N11+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
JMSF001B14+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
JMSF003N18+ GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
____________________________________________________________
consensus GCCGTTAGAGCCCCCCCATGGAAAAGAAGAGTGGATATCAGCCGTTGGATCGTCTAGAAA
. : . : . : . : . : . :
JMSF019H06+ ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC
JMSF014N11+ ATCCCAAGGTGGGACNTGCACCGTTTGATGTGGATGAGTAGACTGTCATGATCATCATCA
JMSF001B14+ ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC-TGATCATCATCA
JMSF003N18+ ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC-TGATCATCATCA
____________________________________________________________
consensus ATCCCAAGGTGGGACCTGCACCGTTTGATGTGGATGAGTAGACTGTC-TGATCATCATCA
. : . : . : . : . : . :
JMSF014N11+ TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTNTTTTGTTCTCAACTCCTCGC
JMSF001B14+ TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTTTTTTGTTCTCAACTCCTCGC
JMSF003N18+ TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTTTTTTGTTCTCAACTCCTCGCACCA
____________________________________________________________
consensus TCATTTTTTCACAACTCCTCACTGTTATTAGTCTTTTTTTGTTCTCAACTCCTCGCACCA