| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN002F04 | Sequence | 614 | 011881 (8) | ref|XP_002278566.1| | 6e-88 | PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera] | |||||
| JMSF003N07 | Sequence | 227 | 011881 (8) | 794 | 011881 (8) | ref|XP_004246745.1| | 3e-107 | PREDICTED: diaminopimelate epimerase, chloroplastic [Solanum lycopersicum] | |||
| JMSF005O17 | Sequence | 313 | 011881 (8) | ||||||||
| JMSF035J04 | Sequence | 675 | 011881 (8) | ref|XP_002278566.1| | 2e-85 | PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera] | 725 | 011881 (8) | ref|XP_004246745.1| | 3e-103 | PREDICTED: diaminopimelate epimerase, chloroplastic [Solanum lycopersicum] |
| JMSF047A12 | Sequence | 655 | 011881 (8) | ref|XP_002278566.1| | 2e-82 | PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera] | 795 | 011881 (8) | ref|XP_004246745.1| | 4e-118 | PREDICTED: diaminopimelate epimerase, chloroplastic [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF003N07- TCTTTA
____________________________________________________________
consensus TCTTTA
. : . : . : . : . : . :
rJMSF003N07- ATCAACAGGTGGTTTGAGCATTTCATCAAGGAACTGGATTAAGAAAATTGGGTACGAAGA
rJMSF035J04- GGAACTGGATTAAGAAAATTGGGTACGAAGA
rJMSF047A12- GTTTGAGCATTTCATCAAGGAACTGGATTAAGAAAATTGGGTACGAAGA
____________________________________________________________
consensus ATCAACAGGTGGTTTGAGCATTTCATCAAGGAACTGGATTAAGAAAATTGGGTACGAAGA
. : . : . : . : . : . :
rJMSF003N07- TGTTGAAAGCTTAATTTAGAAGTTTAATCATTTAGGAAGGTAACAATGGAGAATAATATA
rJMSF035J04- TGTTGAAAGCTTAATTTAGAAGTTTAATCATTTAGGAAGGTAACAATGGAGAATAATATA
rJMSF047A12- TGTTGAAAGCTTAATTTAGAAGTTTAATCATTTAGGAAGGTAACAATGGAGAATAATATA
____________________________________________________________
consensus TGTTGAAAGCTTAATTTAGAAGTTTAATCATTTAGGAAGGTAACAATGGAGAATAATATA
. : . : . : . : . : . :
rJMSF003N07- CCTAAGGGCTTTAAAGAGGAACAGATCCATAAAAGACCACTTCTGCAGGGCCAGTCATAT
rJMSF035J04- CCTAAGGGCTTTAAAGAGGAACAGATCCATAAAAGACCACTTCTGCAGGGCCAGTCATAT
rJMSF047A12- CCTAAGGGCTTTAAAGAGGAACAGATCCATAAAAGACCACTTCTGCAGGGCCAGTCATAT
____________________________________________________________
consensus CCTAAGGGCTTTAAAGAGGAACAGATCCATAAAAGACCACTTCTGCAGGGCCAGTCATAT
. : . : . : . : . : . :
rJMSF003N07- ATACATGGTTGTCATCCTTGTTCCACTCGATCTCAAGCGGCCCACCGGGTAAATCAACGG
rJMSF035J04- ATACATGGTTGTCATCCTTGTTCCACTCGATCTCAAGCGGCCCACCGGGTAAATCAACGG
rJMSF047A12- ATACATGGTTGTCATCCTTGTTCCACTCGATCTCAAGCGGCCCACCGGGTAAATCAACGG
____________________________________________________________
consensus ATACATGGTTGTCATCCTTGTTCCACTCGATCTCAAGCGGCCCACCGGGTAAATCAACGG
. : . : . : . : . : . :
rJMSF003N07- TGCAGCTCCTCCCAGCACGACCCTCGAGCACTGCAGCAACAACTACTGCACAAGCTCCTG
rJMSF035J04- TGCAGCTCCTCCCAGCACGACCCTCGAGCACTGCAGCAACAACTACTGCACAAGCTCCTG
rJMSF047A12- TGCAGCTCCTCCCAGCACGACCCTCGAGCACTGCAGCAACAACTACTGCACAAGCTCCTG
____________________________________________________________
consensus TGCAGCTCCTCCCAGCACGACCCTCGAGCACTGCAGCAACAACTACTGCACAAGCTCCTG
. : . : . : . : . : . :
rJMSF003N07- TCCCACAGGCCAGTGTTGCGCCTGCACCACGCTCCCAAACACGCATTTTAAGGTGTGAAG
rJMSF035J04- TCCCACAGGCCAGTGTTGCGCCTGCACCACGCTCCCAAACACGCATTTTAAGGTGTGAAG
rJMSF047A12- TCCCACAGGCCAGTGTTGCGCCTGCACCACGCTCCCAAACACGCATTTTAAGGTGTGAAG
____________________________________________________________
consensus TCCCACAGGCCAGTGTTGCGCCTGCACCACGCTCCCAAACACGCATTTTAAGGTGTGAAG
. : . : . : . : . : . :
rJMSF003N07- AAGACAACACTTGCACGAATTCAGTGTTAGTTCGTGCAGGGAACATAATGTGATTTTCAA
rJMSF035J04- AAGACAACACTTGCACGAATTCAGTGTTAGTTCGTGCAGGGAACATAATGTGATTTTCAA
rJMSF047A12- AAGACAACACTTGCACGAATTCAGTGTTAGTTCGTGCAGGGAACATAATGTGATTTTCAA
____________________________________________________________
consensus AAGACAACACTTGCACGAATTCAGTGTTAGTTCGTGCAGGGAACATAATGTGATTTTCAA
. : . : . : . : . : . :
rJMSF003N07- ACTTCGGACCAATTTCCGCTAAGTTTATCTCATCCACTAGCAAATCCTTGCTTCCTGTAC
rJMSF035J04- ACTTCGGACCAATTTCCGCTAAGTTTATCTCATCCACTAGCAAATCCTTGCTTCCTGTAC
rJMSF047A12- ACTTCGGACCAATTTCCGCTAAGTTTATCTCATCCACTAGCAAATCCTTGCTTCCTGTAC
____________________________________________________________
consensus ACTTCGGACCAATTTCCGCTAAGTTTATCTCATCCACTAGCAAATCCTTGCTTCCTGTAC
. : . : . : . : . : . :
rJMSF003N07- CAAACGTGACACAATGAGGATTTCCCATGCTAACACATGTTACATTCCAAGTGGTTCCAT
rJMSF035J04- CAAACGTGACACAATGAGGATTTCCCATGCTAACACATGTTACATTCCAAGTGGTTCCAT
rJMSF047A12- CAAACGTGACACAATGAGGATTTCCCATGCTAACACATGTTACATTCCAAGTGGTTCCAT
____________________________________________________________
consensus CAAACGTGACACAATGAGGATTTCCCATGCTAACACATGTTACATTCCAAGTGGTTCCAT
. : . : . : . : . : . :
rJMSF003N07- CTACATCCAGTCCTCCTTTGACAACAGATTGATCTCTATTTGCAGGTAATTTTGTGGGAA
rJMSF035J04- CTACATCCAGTCCTCCTTTGACAACAGATTGATCTCTATTTGCAGGTAATTTTGTGGGAA
rJMSF047A12- CTACATCCAGTCCTCCTTTGACAACAGATTGATCTCTATTTGCAGGTAATTTTGTGGGAA
____________________________________________________________
consensus CTACATCCAGTCCTCCTTTGACAACAGATTGATCTCTATTTGCAGGTAATTTTGTGGGAA
. : . : . : . : . : . :
rJMSF003N07- CATCTGATGCCTTCAGAACTGGTTCGCCCATATCAACCTTAACCTGTCCATTTTCTTGTA
rJMSF035J04- CATCTGATGCCTTCAGAACTGGTTCGCCCATATCAACCTTAACCTGTCCATTTTCTTGTA
rJMSF047A12- CATCTGATGCCTTCAGAACTGGTTCGCCCATATCAACCTTAACCTGTCCATTTTCTTGTA
JMFN002F04+ ATCAACCTTAACCTGTCCATTNTCTTGTA
JMSF035J04+ TTAACCTGTCCATTTTCTTGTA
JMSF047A12+ TA
____________________________________________________________
consensus CATCTGATGCCTTCAGAACTGGTTCGCCCATATCAACCTTAACCTGTCCATTTTCTTGTA
. : . : . : . : . : . :
rJMSF003N07- TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGT-AAT
rJMSF035J04- TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGTAAAT
rJMSF047A12- TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGTAAAT
JMFN002F04+ TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGTAAAT
JMSF035J04+ TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGTAAAT
JMSF047A12+ TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGTAAAT
____________________________________________________________
consensus TCTCAGGAACAATTAAGCCAGCCCCAGTATGTATGGTGAAACTTTGCTTGCCATGTAAAT
. : . : . : . : . : . :
rJMSF003N07- TCTCAAGCTCGCCTAT-AATTTGGCAAAGCATCGAA-TCCATTGCCACACATCTCAGGCT
rJMSF035J04- TCTCAAGCTCGCCTA
rJMSF047A12- TCTCAAGCTCGCCTATAAATTTGGCAAAGCATCGAATTCCATTGCCACACATCTCAGGCT
JMFN002F04+ TCTCAAGCTCGCCTATAAATTTGGCAAAGCATCGAATTCCATTGCCACACATCTCAGGCT
JMSF035J04+ TCTCAAGCTCGCCTATAAATTTGGCAAAGCATCGAATTCCATTGCCACACATCTCAGGCT
JMSF047A12+ TCTCAAGCTCGCCTATAAATTTGGCAAAGCATCGAATTCCATTGCCACACATCTCAGGCT
____________________________________________________________
consensus TCTCAAGCTCGCCTATAAATTTGGCAAAGCATCGAATTCCATTGCCACACATCTCAGGCT
. : . : . : . : . : . :
rJMSF003N07- CACTACCATCA
rJMSF047A12- CACTACCATCAG
JMFN002F04+ CACTACCATCAGAATTGAAGATCCTCATGGTATAATCAGTGCCATTGGTACCAGGCATTG
JMSF035J04+ CACTACCATCAGAATTGAAGATCCTCATGGTATAATCAGTGCCATTGGTACCAGGCATTG
JMSF047A12+ CACTACCATCAGAATTGAAGATCCTCATGGTATAATCAGTGCCATTGGTACCAGGCATTG
____________________________________________________________
consensus CACTACCATCAGAATTGAAGATCCTCATGGTATAATCAGTGCCATTGGTACCAGGCATTG
. : . : . : . : . : . :
JMFN002F04+ CAAAAATCACTCCATCAGCACCGATGCCAAAATTTCTATCACACAATTTCACTGCCTGCT
JMSF035J04+ CAAAAATCACTCCATCAGCACCGATGCCAAAATTTCTATCACACAATTTCACTGCCTGCT
JMSF047A12+ CAAAAATCACTCCATCAGCACCGATGCCAAAATTTCTATCACACAATTTCACTGCCTGCT
____________________________________________________________
consensus CAAAAATCACTCCATCAGCACCGATGCCAAAATTTCTATCACACAATTTCACTGCCTGCT
. : . : . : . : . : . :
JMFN002F04+ CAGGTGTGATTTTAGGTTCTGTTGAATCTCTATTGTCAACCAATATGAAGTCGTTGCCTA
JMSF035J04+ CAGGTGTGATTTTAGGTTCTGTTGAATCTCTATTGTCAACCAATATGAAGTCGTTGCCTA
JMSF047A12+ CAGGTGTGATTTTAGGTTCTGTTGAATCTCTATTGTCAACCAATATGAAGTCGTTGCCTA
____________________________________________________________
consensus CAGGTGTGATTTTAGGTTCTGTTGAATCTCTATTGTCAACCAATATGAAGTCGTTGCCTA
. : . : . : . : . : . :
JMFN002F04+ GGCCATGGTACTTGACGAAGTGGAGATATCCACTTTCCTTGTGATCGAGAAATGAAGCTG
JMSF035J04+ GGCCATGGTACTTGACGAAGTGGAGATATCCACTTTCCTTGTGATCGAGAAATGAAGCTG
JMSF005O17+ CCTTGTGATCGAGAAATGAAGCTG
JMSF047A12+ GGCCATGGTACTTGACGAAGTGGAGATATCCACTTTCCTTGTGATCGAGAAATGAAGCTG
____________________________________________________________
consensus GGCCATGGTACTTGACGAAGTGGAGATATCCACTTTCCTTGTGATCGAGAAATGAAGCTG
. : . : . : . : . : . :
JMFN002F04+ GAGAAGCTTTCTCGGTAGCTTCAGAGCTCATTGACAAAGCAGCCGAAATGCAGAAAGTAG
JMSF035J04+ GAGAAGCTTTCTCGGTAGCTTCAGAGCTCATTGACAAAGCAGCCGAAATGCAGAAAGTAG
JMSF005O17+ GAGAAGCTTTCTCGGTAGCTTCAGAGCTCATTGACAAAGCAGCCGAAATGCAGAAAGTAG
JMSF047A12+ GAGAAGCTTTCTCGGTAGCTTCAGAGCTCATTGACAAAGCAGCCGAAATGCAGAAAGTAG
____________________________________________________________
consensus GAGAAGCTTTCTCGGTAGCTTCAGAGCTCATTGACAAAGCAGCCGAAATGCAGAAAGTAG
. : . : . : . : . : . :
JMFN002F04+ GGCGCCGGAAGGGGGGACAAGCAGGGATTTGGAGAGCGCGTCGTTGCAGAGATAAAGGCG
JMSF035J04+ GGCGCCGGAAGGGGGGACAAGCAGGGATTTGGAGAGCGCGTCGTTGCAGAGATAAAGGCG
JMSF005O17+ GGCGCCGGAAGGGGGGACAAGCAGGGATTTGGAGAGCGCGTCGTTGCAGAGATAAAGGCG
JMSF047A12+ GGCGCCGGAAGGGGGGACAAGCAGGGATTTGGAGAGCGCGTCGTTGCAGAGATAAAGGCG
JMSF003N07+ GGGACAAGCAGGGATTTGGAGAGCGCGTCGTTGCAGAGATAAAGGCG
____________________________________________________________
consensus GGCGCCGGAAGGGGGGACAAGCAGGGATTTGGAGAGCGCGTCGTTGCAGAGATAAAGGCG
. : . : . : . : . : . :
JMFN002F04+ AAGGAGAAGAAAATCTGAACGGAGCGGTTAAGGAAGAAGACAGAGATCGGCGACTGGAGG
JMSF035J04+ AAGGAGAAGAAAATCTGAACGGAGCGGTTAAGGAAGAAGACAGAGATCGGCGACTGGAGG
JMSF005O17+ AAGGAGAAGAAAATCTGAACGGAGCGGTTAAGGAAGAAGACAGAGATCGGCGACTGGAGG
JMSF047A12+ AAGGAGAAGAAAATCTGAACGGAGCGGTTAAGGAAGAAGACAGAGATCGGCGACTGGAGG
JMSF003N07+ AAGGAGAAGAAAATCTGAACGGAGCGGTTAAGGAAGAAGACAGAGATCGGCGACTGGAGG
____________________________________________________________
consensus AAGGAGAAGAAAATCTGAACGGAGCGGTTAAGGAAGAAGACAGAGATCGGCGACTGGAGG
. : . : . : . : . : . :
JMFN002F04+ CCGTAAGCGGAAGCGTTATGGCGGCGGTTATCGACATGGAAGAAG
JMSF035J04+ CCGTAAGCGGAAGCGTTATGGCGGCGGTTATCGACATGGAAGAAGACGGCGAGAGAGAGA
JMSF005O17+ CCGTAAGCGGAAGCGTTATGGCGGCGGTTATCGACATGGAAGAAGACGGCGAGAGAGAGA
JMSF047A12+ CCGTAAGCGGAAGCGTTATGGCGGCGGTTATCGACATGGAAGAAGACGGCGAGAGAGAGA
JMSF003N07+ CCGTAAGCGGAAGCGTTATGGCGGCGGTTATCGACATGGAAGAAGACGGCGAGAGAGAGA
____________________________________________________________
consensus CCGTAAGCGGAAGCGTTATGGCGGCGGTTATCGACATGGAAGAAGACGGCGAGAGAGAGA
. : . : . : . : . : . :
JMSF035J04+ GAGAGCGTCAAACTGAGACTTGTTAGAGCTGACGAGGGAGTGAAATGC
JMSF005O17+ GAGAGCGTCAAACTGAGACTTGTTAGAGCTGACGAGGGAGTGAAATGC
JMSF047A12+ GAGAGCGTCAAACTGAGACTTGTTAGAGCTGACGAGGGAGTGAAATGC
JMSF003N07+ GAGAGCGTCAAACTGAGACTTGTTAGAGCTGACGAGGGAGTGAAATGCAATTAGCCTCTT
____________________________________________________________
consensus GAGAGCGTCAAACTGAGACTTGTTAGAGCTGACGAGGGAGTGAAATGCAATTAGCCTCTT