Contig 011880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003D08Sequence626011880 (3)ref|XP_002308839.1|2e-54hypothetical protein POPTR_0006s02610g [Populus trichocarpa] gb|EEE92362.1| hypo
JMSF003I18Sequence353011880 (3)ref|XP_002523678.1|2e-04conserved hypothetical protein [Ricinus communis] gb|EEF38713.1| conserved hypot735011880 (3)ref|XP_002523678.1|4e-86conserved hypothetical protein [Ricinus communis] gb|EEF38713.1| conserved hypot

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003I18- TCTTGTGTTCAC
                      ____________________________________________________________
consensus TCTTGTGTTCAC
 
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rJMSF003I18- AACAATTATGTGCATACTAAGAAAGCACAAGTATTGCTGGGCTTAACTATACTGCATAAT
                      ____________________________________________________________
consensus AACAATTATGTGCATACTAAGAAAGCACAAGTATTGCTGGGCTTAACTATACTGCATAAT
 
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rJMSF003I18- TACTTGCTATGTACTCACAACATTCCTTAGATCCTATTAAAAACCGAAGTGGCCGGGTTT
                      ____________________________________________________________
consensus TACTTGCTATGTACTCACAACATTCCTTAGATCCTATTAAAAACCGAAGTGGCCGGGTTT
 
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rJMSF003I18- GAGAGATGTACGCCTTCATGTATAAGGCAATGCAATTGAGTCATATGCACTCCAACTCCA
                      ____________________________________________________________
consensus GAGAGATGTACGCCTTCATGTATAAGGCAATGCAATTGAGTCATATGCACTCCAACTCCA
 
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rJMSF003I18- TTAGATGCTCCTCAGAAGCCATTAAGATTGGGACTTTTATCCTTGGATTTTGACCAGCAG
                      ____________________________________________________________
consensus TTAGATGCTCCTCAGAAGCCATTAAGATTGGGACTTTTATCCTTGGATTTTGACCAGCAG
 
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rJMSF003I18- TGATGTATCTGTCATGACAGAATACAAGGTAGTTTCCATCATCGTCTCTAACCAGGATAT
                      ____________________________________________________________
consensus TGATGTATCTGTCATGACAGAATACAAGGTAGTTTCCATCATCGTCTCTAACCAGGATAT
 
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rJMSF003I18- AAAGTTGTTGCCCGGCAGCATATCCACCAAGAAGCTGGTAGGATATCTCAGATTGATCCA
                      ____________________________________________________________
consensus AAAGTTGTTGCCCGGCAGCATATCCACCAAGAAGCTGGTAGGATATCTCAGATTGATCCA
 
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rJMSF003I18- TTGCAAGACACAGGTCTTCAGAACAGGCAGCAAGTTCTAATTGAGTTTGGTATATGAAAT
JMFN003D08+ ACAGGCAGCAAGTTCTAATTGAGTTTGGTATATGAAAT
                      ____________________________________________________________
consensus TTGCAAGACACAGGTCTTCAGAACAGGCAGCAAGTTCTAATTGAGTTTGGTATATGAAAT
 
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rJMSF003I18- CCAAAGCGGCAGAGATTTCCTTCTCGAACTGGTGAAATGGTCCGCTCTCAAATCTCATTT
JMFN003D08+ CCAAAGCGGCAGAGATTTCCTTCTCGAACTGGTGAAATGGTCCGCTCTCAAATCTCATTT
                      ____________________________________________________________
consensus CCAAAGCGGCAGAGATTTCCTTCTCGAACTGGTGAAATGGTCCGCTCTCAAATCTCATTT
 
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rJMSF003I18- TTCGAAGTTTACACAGCCCCTCTCCCAACTCCATCATCGCACCTTTGTGATTCTGATTGA
JMFN003D08+ TTCGAAGTTTACACAGCCCCTCTCCCAACTCCATCATCGCACCTTTGTGATTCTGATTGA
                      ____________________________________________________________
consensus TTCGAAGTTTACACAGCCCCTCTCCCAACTCCATCATCGCACCTTTGTGATTCTGATTGA
 
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rJMSF003I18- AGAGGTGATGGAAGCCGACAGCGCATTGCAGAATGGCGTGAAAAAGGGTTCGAGAAGGGT
JMFN003D08+ AGAGGTGATGGAAGCCGACAGCGCATTGCAGAATGGCGTGAAAAAGGGTTCGAGAAGGGT
                      ____________________________________________________________
consensus AGAGGTGATGGAAGCCGACAGCGCATTGCAGAATGGCGTGAAAAAGGGTTCGAGAAGGGT
 
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rJMSF003I18- CATCCGAGGAGTGCCATAGAGCTTCCAGAACGTCATGGCATTTGTAGTATTCCATCCTAT
JMFN003D08+ CATCCGAGGAGTGCCATAGAGCTTCCAGAACGTCATGGCATTTGTAGTATTCCATCCTAT
JMSF003I18+ GGAGTGCCATAGAGCTTCCAGAACGTCATGGCATTTGTAGTATTCCATCCTAT
                      ____________________________________________________________
consensus CATCCGAGGAGTGCCATAGAGCTTCCAGAACGTCATGGCATTTGTAGTATTCCATCCTAT
 
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rJMSF003I18- TGAAAAGCGCCACCGCATATTCGAACCGGGCTTCGTCGTCGTCCTCCTCCGCTTCTATGA
JMFN003D08+ TGAAAAGCGCCACCGCATATTCGAACCGGGCTTCGTCGTCGTCCTCCTCCGCTTCTATGA
JMSF003I18+ TGAAAAGCGCCACCGCATATTCGAACCGGGCTTCGTCGTCGTCCTCCTCCGCTTCTATGA
                      ____________________________________________________________
consensus TGAAAAGCGCCACCGCATATTCGAACCGGGCTTCGTCGTCGTCCTCCTCCGCTTCTATGA
 
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rJMSF003I18- ATC
JMFN003D08+ ATCTGCCGCCGCCGCCTCCTCGCCATGAAGAAAACCTGTGGCGTGCCACCATCGCGGTTC
JMSF003I18+ ATCTGCCGCCGCCGCCTCCTCGCCATGAAGAAAACCTGTGGCGTGCCACCATCGCGGTTC
                      ____________________________________________________________
consensus ATCTGCCGCCGCCGCCTCCTCGCCATGAAGAAAACCTGTGGCGTGCCACCATCGCGGTTC
 
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JMFN003D08+ TCTTCTTCTTCCTCCTCCATTGAGGCTTGGGGTAACCAATAGGAGATGTCGATAGACGAC
JMSF003I18+ TCTTCTTCTTCCTCCTCCATTGAGGCTTGGGGTAACCAATAGGAGATGTCGATAGACGAC
                      ____________________________________________________________
consensus TCTTCTTCTTCCTCCTCCATTGAGGCTTGGGGTAACCAATAGGAGATGTCGATAGACGAC
 
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JMFN003D08+ AAGTGT
JMSF003I18+ AAGTGTGTTGAAGCTTAGAGATTAGATTGAATTGTGAGAAGGAAGTAGAAGTAGCCATTG
                      ____________________________________________________________
consensus AAGTGTGTTGAAGCTTAGAGATTAGATTGAATTGTGAGAAGGAAGTAGAAGTAGCCATTG
 
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JMSF003I18+ CCATAGAATTGAAGAAGTAGTGACTTCTACTGTTCGCAACTACAAATAAAAATCTCACCC
                      ____________________________________________________________
consensus CCATAGAATTGAAGAAGTAGTGACTTCTACTGTTCGCAACTACAAATAAAAATCTCACCC