Contig 011877:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013J23Sequence508011877 (5)620009125 (7)ref|XP_009778431.1|8e-65PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMFF033N22Sequence510011877 (5)ref|XP_004233034.1|2e-06PREDICTED: U-box domain-containing protein 17 [Solanum lycopersicum]748009125 (7)ref|XP_009778431.1|3e-91PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMFF039D05Sequence532011877 (5)ref|NP_001275105.1|2e-09ACRE 276-like protein [Solanum tuberosum] gb|ABK96801.1| ACRE 276-like protein [645009125 (7)ref|XP_009778431.1|3e-72PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMSF003C20Sequence313011877 (5)768009125 (7)ref|XP_009778431.1|3e-121PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]
JMSF032P15Sequence667011877 (5)ref|XP_004233034.1|1e-21PREDICTED: U-box domain-containing protein 17 [Solanum lycopersicum]680009125 (7)ref|XP_009778431.1|1e-94PREDICTED: U-box domain-containing protein 17 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032P15+ TAATCAAGCAGGATTTTGGAGCGGTACAGCAGAAGGTA
                      ____________________________________________________________
consensus TAATCAAGCAGGATTTTGGAGCGGTACAGCAGAAGGTA
 
. : . : . : . : . : . :
JMSF032P15+ CAGCTCTTTAAAGCACAGAAAAGCAGTAGAAGGAAACCTCGAAGAAGAAGAAGAAGAAGA
                      ____________________________________________________________
consensus CAGCTCTTTAAAGCACAGAAAAGCAGTAGAAGGAAACCTCGAAGAAGAAGAAGAAGAAGA
 
. : . : . : . : . : . :
JMFF039D05+ GGAGAAAATNTGTATTTTNCGGAG
JMSF032P15+ AGAACCTCTGTTTTCTCGAAGGCATTCCATGGCGACGGAGAAAATCTGTATTTTACGGAG
                      ____________________________________________________________
consensus AGAACCTCTGTTTTCTCGAAGGCATTCCATGGCGACGGAGAAAATCTGTATTTTACGGAG
 
. : . : . : . : . : . :
JMFF033N22+ CCGGCCCCTCCTTGCCGGAAAACGACGAAAT
JMFF013J23+ CCGGCCCCTCNTTGCCGGAAANNGNNGAAAT
JMFF039D05+ GAGAGATTTGGAGTTNTTCCGCTGGTACGCCGGCCCCTCCTTGCCGGAAAACGACGAAAT
JMSF032P15+ GAGAGATTTGGAGTTCTTCCGCTGGTACGCCGGCCCCTCCTTGCCGGAAAACGACGAAAT
                      ____________________________________________________________
consensus GAGAGATTTGGAGTTCTTCCGCTGGTACGCCGGCCCCTCCTTGCCGGAAAACGACGAAAT
 
. : . : . : . : . : . :
JMFF033N22+ CAGCTCCGTTGCCAACGCCGCCAGCGTCTCCACCAACGCCCAGTCCGTCAGATCCAGCGG
JMFF013J23+ CAGCTCCGTTGCCAACGCCGCCAGNGTNTCCNCCAACGCCCAGTCCGTCAGATCCAGCGG
JMFF039D05+ CAGCTCCGTTGCCAACGCCGCCAGCGTCTCCACCAACGCCCAGTCCGTCAGATCCAGCGG
JMSF032P15+ CAGCTCCGTTGCCAACGCCGCCAGCGTCTCCACCAACGCCCAGTCCGTCAGATCCAGCGG
                      ____________________________________________________________
consensus CAGCTCCGTTGCCAACGCCGCCAGCGTCTCCACCAACGCCCAGTCCGTCAGATCCAGCGG
 
. : . : . : . : . : . :
JMFF033N22+ CGCCAAGAACGCCTCCAGCGACGGCGACCGCCGCCGCCGCAACGACGAGAATATAGCCGC
JMFF013J23+ CGCCAAGAACGCCTCCAGCGACGGCGACCGCCGCCGCCGCAACGACGAGAATATAGCCGC
JMFF039D05+ CGCCAAGAACGCCTCCAGCGACGGCGACCGCCGCCGCCGCAACGACGAGAATATAGCCGC
JMSF032P15+ CGCCAAGAACGCCTCCAGCGACGGCGACCGCCGCCGCCGCAACGACGAGAATATAGCCGC
                      ____________________________________________________________
consensus CGCCAAGAACGCCTCCAGCGACGGCGACCGCCGCCGCCGCAACGACGAGAATATAGCCGC
 
. : . : . : . : . : . :
JMFF033N22+ GGACGCCATTCAAAGTCAACAAACACCCACCCAACACCTCTTTCTCTCTCTAGACCGAAA
JMFF013J23+ GGACGCCATTCAAAGTCAACAAACACCCACCCAACACCTCTTTCTCTCTCTAGACCGAAA
JMFF039D05+ GGACGCCATTCAAAGTCAACAAACACCCACCCAACACCTCTTTCTCTCTCTAGACCGAAA
JMSF032P15+ GGACGCCATTCAAAGTCAACAAACACCCACCCAACACCTCTTTCTCTCTCTAGACCGAAA
JMSF003C20+ CTCTAGACCGAAA
                      ____________________________________________________________
consensus GGACGCCATTCAAAGTCAACAAACACCCACCCAACACCTCTTTCTCTCTCTAGACCGAAA
 
. : . : . : . : . : . :
JMFF033N22+ AAGCTTCGGTCTTTATTCCTCCCTCTCTCTCTCTCTCAAGAATTCGCAAACCCAGCCCAA
JMFF013J23+ AAGCTTCGGTCTTTATTCCTCCCTCTCTCTCTCTCTCAAGAATTCGCAAACCCAGCCCAA
JMFF039D05+ AAGCTTCGGTCTTTATTCCTCCCTCTCTCTCTCTCTCAAGAATTCGCAAACCCAGCCCAA
JMSF032P15+ AAGCTTCGGTCTTTATTCCTCCCTCTCTCTCTCTCTCAAGAATTCGCAAACCCAGCCCAA
JMSF003C20+ AAGCTTCGGTCTTTATTCCTCCCTCTCTCTCTCTCTCAAGAATTCGCAAACCCAGCCCAA
                      ____________________________________________________________
consensus AAGCTTCGGTCTTTATTCCTCCCTCTCTCTCTCTCTCAAGAATTCGCAAACCCAGCCCAA
 
. : . : . : . : . : . :
JMFF033N22+ AAATCCTCAAGAAATCTTCGGATTCCCGGAGAAGACGACTTCGAAAATTAATGGCGATCC
JMFF013J23+ AAATCCTCAAGAAATCTTCGGATTCCCGGAGAAGACGACTTCGAAAATTAATGGCGATCC
JMFF039D05+ AAATCCTCAAGAAATCTTCGGATTCCCGGAGAAGACGACTTCGAAAATTAATGGCGATCC
JMSF032P15+ AAATCCTCAAGAAATCTTCGGATTCCCGGAGAAGACGACTTCGAAAATTAATGGCGATCC
JMSF003C20+ AAATCCTCAAGAAATCTTCGGATTCCCGGAGAAGACGACTTCGAAAATTAATGGCGATCC
                      ____________________________________________________________
consensus AAATCCTCAAGAAATCTTCGGATTCCCGGAGAAGACGACTTCGAAAATTAATGGCGATCC
 
. : . : . : . : . : . :
JMFF033N22+ TTTTTTATTAAGGAAATCAAAAAACCAATCTTTTTGAGTGCGTGAATTGAATATGTACAC
JMFF013J23+ TTTTTTATTAAGGAAATCAAAAAACCAATCTTTTTGAGTGCGTGAATTGAATATGTACAC
JMFF039D05+ TTTTTTATTAAGGAAATCAAAAAACCAATCTTTTTGAGTGCGTGAATTGAATATGTACAC
JMSF032P15+ TTTTTTATTAAGGAAATCAAAAAACCAATCTTTTTGAGTGCGTGAATTGAATATGTACAC
JMSF003C20+ TTTTTTATTAAGGAAATCAAAAAACCAATCTTTTTGAGTGCGTGAATTGAATATGTACAC
                      ____________________________________________________________
consensus TTTTTTATTAAGGAAATCAAAAAACCAATCTTTTTGAGTGCGTGAATTGAATATGTACAC
 
. : . : . : . : . : . :
JMFF033N22+ ATATAAGGAAACTATTAATCGCAAATCCGCGTGAGAAGATGAAGAAGATATGAAAAAAGG
JMFF013J23+ ATATAAGGAAACTATTAATCGCAAATCCGCGTGAGAAGATGAAGAAGATATGAAAAAAGG
JMFF039D05+ ATATAAGGAAACTATTAATCGCAAATCCGCGTGAGAAGATGAAGAAGATATGAAAAAAGG
JMSF032P15+ ATATAAGGAAACTATTAATCGCAAATCCGCGTGAGAAGATGAAGAAGATATGAAAAAAGG
JMSF003C20+ ATATAAGGAAACTATTAATCGCAAATCCGCGTGAGAAGATGAAGAAGATATGAAAAAAGG
                      ____________________________________________________________
consensus ATATAAGGAAACTATTAATCGCAAATCCGCGTGAGAAGATGAAGAAGATATGAAAAAAGG
 
. : . : . : . : . : . :
JMFF033N22+ AAGAAGTTTGGAGAAAATGGTAAAGAAC
JMFF013J23+ AAGAAGTTTGGAGAAAATGGTAAAGAAC
JMFF039D05+ AAGAAGTTTGGAGAAAATGGTAAAGAAC
JMSF032P15+ AAGAAGTTTGGAGAAAATGGTAAAGAAC
JMSF003C20+ AAGAAGTTTGGAGAAAATGGTAAAGAACCAGGGGAAGCGTCTGGGGTAGTTGTATGCTTC
                      ____________________________________________________________
consensus AAGAAGTTTGGAGAAAATGGTAAAGAACCAGGGGAAGCGTCTGGGGTAGTTGTATGCTTC