Contig 011876:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF003A16-                                                              GTTATTTA
                      ____________________________________________________________
consensus                                                                 GTTATTTA
 
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rJMSF003A16-          GCTGAAAAGAAGCTCAACAGAACTCCCATTATTTAGGTTTATTATTAGATAGAAACAAAG
rJMSF019O01-                                                        AGATAGAAACAAAG
                      ____________________________________________________________
consensus             GCTGAAAAGAAGCTCAACAGAACTCCCATTATTTAGGTTTATTATTAGATAGAAACAAAG
 
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rJMSF003A16-          CTCAATACAACTCCTATTCTTCCAGACAACATGTTTACATATGCACAAGCATAGATTTTG
rJMSF019O01-          CTCAATACAACTCCTATTCTTCCAGACAACATGTTTACATATGCACAAGCATAGATTTTG
                      ____________________________________________________________
consensus             CTCAATACAACTCCTATTCTTCCAGACAACATGTTTACATATGCACAAGCATAGATTTTG
 
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rJMSF003A16-          CACTTGGTGAATGCAGAAGCTTCTTAAACAACACTGTTGGAGACAAGCCAGGTCAATATC
rJMSF019O01-          CACTTGGTGAATGCAGAAGCTTCTTAAACAACACTGTTGGAGACAAGCCAGGTCAATATC
                      ____________________________________________________________
consensus             CACTTGGTGAATGCAGAAGCTTCTTAAACAACACTGTTGGAGACAAGCCAGGTCAATATC
 
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rJMSF003A16-          AAGAACTGTATACGGGTGCCAGATCAGTAGCCCTCCTAATCCAATTGTCTTCTGACCATT
rJMSF019O01-          AAGAACTGTATACGGGTGCCAGATCAGTAGCCCTCCTAATCCAATTGTCTTCTGACCATT
                      ____________________________________________________________
consensus             AAGAACTGTATACGGGTGCCAGATCAGTAGCCCTCCTAATCCAATTGTCTTCTGACCATT
 
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rJMSF003A16-          TGCAGCCAAGAGTATCTACTACATGCAAACTGTATGCATGCCTTGATTTTTCAGACTGAT
rJMSF019O01-          TGCAGCCAAGAGTATCTACTACATGCAAACTGTATGCATGCCTTGATTTTTCAGACTGAT
                      ____________________________________________________________
consensus             TGCAGCCAAGAGTATCTACTACATGCAAACTGTATGCATGCCTTGATTTTTCAGACTGAT
 
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rJMSF003A16-          TCTCAAAGCTCTGGTGGATAAGATCACCATGGATGACAACCAAAGTGCCAGCTTTAACTT
rJMSF019O01-          TCTCAAAGCTCTGGTGGATAAGATCACCATGGATGACAACCAAAGTGCCAGCTTTAACTT
                      ____________________________________________________________
consensus             TCTCAAAGCTCTGGTGGATAAGATCACCATGGATGACAACCAAAGTGCCAGCTTTAACTT
 
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rJMSF003A16-          CAATAGGAACAAAATCTTTTTGGTCATAGAGTGGGGATGGGTTATCAAAATGAACCCCAT
rJMSF019O01-          CAATAGGAACAAAATCTTTTTGGTCATAGAGTGGGGATGGGTTATCAAAATGAACCCCAT
                      ____________________________________________________________
consensus             CAATAGGAACAAAATCTTTTTGGTCATAGAGTGGGGATGGGTTATCAAAATGAACCCCAT
 
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rJMSF003A16-          TCGCATCTCGAATGAATCTCCTCACAAGACCATTTTTATGAGACCCTGGAATAGCCCAAA
rJMSF019O01-          TCGCATCTCGAATGAATCTCCTCACAAGACCATTTTTATGAGACCCTGGAATAGCCCAAA
                      ____________________________________________________________
consensus             TCGCATCTCGAATGAATCTCCTCACAAGACCATTTTTATGAGACCCTGGAATAGCCCAAA
 
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rJMSF003A16-          GACAGCCATTTATAACTGTTGCATCCTCTAAAGCCAGCCACAACCCCGTGCAAGTTCGTG
rJMSF019O01-          GACAGCCATTTATAACTGTTGCATCCTCTAAAGCCAGCCACAACCCCGTGCAAGTTCGTG
                      ____________________________________________________________
consensus             GACAGCCATTTATAACTGTTGCATCCTCTAAAGCCAGCCACAACCCCGTGCAAGTTCGTG
 
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rJMSF003A16-          GCTCAGTATGCAGAAATGAGTTATCCTGGTGTGGCACTACTTCACCCCCAATACCTGGTT
rJMSF019O01-          GCTCAGTATGCAGAAATGAGTTATCCTGGTGTGGCACTACTTCACCCCCAATACCTGGTT
                      ____________________________________________________________
consensus             GCTCAGTATGCAGAAATGAGTTATCCTGGTGTGGCACTACTTCACCCCCAATACCTGGTT
 
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rJMSF003A16-          GCTTGAATATGTACATGGATTGAATGACCACTGGCCTATGGTAACCCAAAGACTGGAGTA
rJMSF019O01-          GCTTGAATATGTACATGGATTGAATGACCACTGGCCTATGGTAACCCAAAGACTGGAGTA
                      ____________________________________________________________
consensus             GCTTGAATATGTACATGGATTGAATGACCACTGGCCTATGGTAACCCAAAGACTGGAGTA
 
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rJMSF003A16-          GGCCTGACATTCTCTCTGTACTAGAGAACTTCTTAAACACAGGATCAATTTCATCCAANG
rJMSF019O01-          GGCCTGACATTCTCTCTGTACTAGAGAACTTCTTAAACACAGGATCAATTTCATCCAAAG
JMSF019O01+                        CTCTGTACTAGAGAACTTCTTAAACACAGGATCAATTTCATCCAAAG
                      ____________________________________________________________
consensus             GGCCTGACATTCTCTCTGTACTAGAGAACTTCTTAAACACAGGATCAATTTCATCCAAAG
 
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rJMSF003A16-          CGTGACCAACTTT-NTTATTGAGAGATGCTTTGGCTGCTT                    
rJMSF019O01-          CGTGACCAACTTTGTTTATTGAGAGATGCTTTGGCTGCTTTAAGTTGCCATCATCCCCAA
JMSF019O01+           CGTGACCAACTTTGTTTATTGAGAGATGCTTTGGCTGCTTTAAGTTGCCATCATCCCCAA
                      ____________________________________________________________
consensus             CGTGACCAACTTTGTTTATTGAGAGATGCTTTGGCTGCTTTAAGTTGCCATCATCCCCAA
 
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rJMSF019O01-          ATGCTTTCTCTTNCAAGAAAAATG-AACCNTCTCAGCACTTTC-AAGAAGTAATTGTCAG
JMSF019O01+           ATGCTTTCTCTTCAAAGAAAAATGAAACCTTCTCAGCACTTTCAAAGAAGTAATTGTCAG
JMSF003A16+                                                          AAGTAATTGTCAG
                      ____________________________________________________________
consensus             ATGCTTTCTCTTCCAAGAAAAATGAAACCTTCTCAGCACTTTCAAAGAAGTAATTGTCAG
 
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rJMSF019O01-          TAGTATTTTTCTGAT                                             
JMSF019O01+           TAGTATTTTTCTGATTCCTGGTGGAGAAAATTGAGGCGGTGGAAGAGCAATCGAACGTAT
JMSF003A16+           TAGTATTTTTCTGATTCCTGGTGGAGAAAATTGAGGCGGTGGAAGAGCAATCGAACGTAT
                      ____________________________________________________________
consensus             TAGTATTTTTCTGATTCCTGGTGGAGAAAATTGAGGCGGTGGAAGAGCAATCGAACGTAT
 
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JMSF019O01+           CTAGCAACTCCTCCATTCTCTTCCTCATCGATTCTATATCTTCTGCACTGGAAAACGATT
JMSF003A16+           CTAGCAACTCCTCCATTCTCTTCCTCATCGATTCTATATCTTCTGCACTGGAAAACGATT
                      ____________________________________________________________
consensus             CTAGCAACTCCTCCATTCTCTTCCTCATCGATTCTATATCTTCTGCACTGGAAAACGATT
 
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JMSF019O01+           CCAACACAAGATACCCTTGCGAATTGAAGAACTGGAGTTGATCTGAACTGAGACTTCCAA
JMSF003A16+           CCAACACAAGATACCCTTGCGAATTGAAGAACTGGAGTTGATCTGAACTGAGACTTCCAA
                      ____________________________________________________________
consensus             CCAACACAAGATACCCTTGCGAATTGAAGAACTGGAGTTGATCTGAACTGAGACTTCCAA
 
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JMSF019O01+           GGATTCCCATGTCTGCGGCCTTTCTCCTGATTTTGGT                       
JMSF003A16+           GGATTCCCATGTCTGCGGCCTTTCTCCTGATTTTGGTGAGAAATGTATTACTCGTATATG
                      ____________________________________________________________
consensus             GGATTCCCATGTCTGCGGCCTTTCTCCTGATTTTGGTGAGAAATGTATTACTCGTATATG