Contig 011875:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF003A04-                                                     GTCTACGTAATGGCATA
rJMSF021K16-                                                    AGTCTACGTAATGGCATA
                      ____________________________________________________________
consensus                                                       AGTCTACGTAATGGCATA
 
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rJMSF003A04-          TGTTTATGGTCAAATAGAAAATACAGTCTTACAATCTTAAATTTGGCCAGTCCCTAGAGG
rJMSF021K16-          TGTTTAT-GTCAAATAGAAAATACAGTCTTACAATCTTAAATTTGGCCAGTCCCTAGAGG
                      ____________________________________________________________
consensus             TGTTTATGGTCAAATAGAAAATACAGTCTTACAATCTTAAATTTGGCCAGTCCCTAGAGG
 
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rJMSF003A04-          CTGCCTTGAAGTGTCTCCTGTGGCCCAAGCTTGGTAGTCCTTCACTAGCTGAGCCATAAA
rJMSF021K16-          CTGCCTTGAAGTGTCTCCTGTGGCCCAAGCTTGGTAGTCCCTCACTAGCTGAGCCATAAA
                      ____________________________________________________________
consensus             CTGCCTTGAAGTGTCTCCTGTGGCCCAAGCTTGGTAGTCCTTCACTAGCTGAGCCATAAA
 
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rJMSF003A04-          CCGAGGAAGCATGATCCCGAGTATCTGGTTTAGGACCTGAGCTCCAGTTGATTCAATTGC
rJMSF021K16-          CCGAGGAAGCATGATCCCGAGTATCTGGTTTAGGACCTGAGCTCCAGTTGATTCAATTGC
JMSF021K16+                                              CCTGAGCTCCAGTTGATTCAATTGC
                      ____________________________________________________________
consensus             CCGAGGAAGCATGATCCCGAGTATCTGGTTTAGGACCTGAGCTCCAGTTGATTCAATTGC
 
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rJMSF003A04-          TTGGACTGGAAGTGCTCGAAATGCAAAGGGAACTTCAATGTTAACCTCAATTACTGCATC
rJMSF021K16-          TTGGACTGGAAGTGCTCGAAATGCAAAGGGAACTTCAATGTTAACCTCAATTACTGCATC
JMSF021K16+           TTGGACTGGAAGTGCTCGAAATGCAAAGGGAACTTCAATGTTAACCTCAATTACTGCATC
                      ____________________________________________________________
consensus             TTGGACTGGAAGTGCTCGAAATGCAAAGGGAACTTCAATGTTAACCTCAATTACTGCATC
 
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rJMSF003A04-          TGAAGTGAGTTTCTGCACTCCTGAGTCTCTTCGATTGCCATCATAGGATATTCTATTCAC
rJMSF021K16-          TGAAGTGAGTTTCTGCACTCCTGAGTCTCTTCGATTGCCATCATAGGATATTCTATTCAC
JMSF021K16+           TGAAGTGAGTTTCTGCACTCCTGAGTCTCTTCGATTGCCATCATAGGATATTCTATTCAC
                      ____________________________________________________________
consensus             TGAAGTGAGTTTCTGCACTCCTGAGTCTCTTCGATTGCCATCATAGGATATTCTATTCAC
 
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rJMSF003A04-          CATAGAAGCGTCAAACTTATCATTTTGAGCGACAACAATAGGTGAGCCCTCGAGCTTACA
rJMSF021K16-          CATAGAAGCGTCAAACTTATCATTTTGAGCGACAACAATAGGTGAGCCCTCGAGCTTACA
JMSF021K16+           CATAGAAGCGTCAAACTTATCATTTTGAGCGACAACAATAGGTGAGCCCTCGAGCTTACA
                      ____________________________________________________________
consensus             CATAGAAGCGTCAAACTTATCATTTTGAGCGACAACAATAGGTGAGCCCTCGAGCTTACA
 
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rJMSF003A04-          AGACAAGAGGTTAATAGAGCATCCATCAGGCTGCTCCTCAACTCTCACCAGAAGAACAGG
rJMSF021K16-          AGACAAGAGGTTAATAGAGCATCCATCAGGCTGCTCCTCAACTCTCACCAGAAGAACAGG
JMSF021K16+           AGACAAGAGGTTAATAGAGCATCCATCAGGCTGCTCCTCAACTCTCACCAGAAGAACAGG
                      ____________________________________________________________
consensus             AGACAAGAGGTTAATAGAGCATCCATCAGGCTGCTCCTCAACTCTCACCAGAAGAACAGG
 
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rJMSF003A04-          ACACACTTCAAATGCGAAGAATTTAAACCTATACACATAACATCTGAAGGTATTATCATC
rJMSF021K16-          ACACACTTCAAATGCGAAGAATTTAAACCTATACACATAACATCTGAAGGTATTATCATC
JMSF021K16+           ACACACTTCAAATGCGAAGAATTTAAACCTATACACATAACATCTGAAGGTATTATCATC
                      ____________________________________________________________
consensus             ACACACTTCAAATGCGAAGAATTTAAACCTATACACATAACATCTGAAGGTATTATCATC
 
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rJMSF003A04-          CACCCGTTCGATCCTCTCAGCATCCAACACCGAGTACTGGCTCGCCGGCAAGCTCATATA
rJMSF021K16-          CACCCGTTCGATCCTCTCAGCATCCAACACCGAGTACTGGCTCGCCGGCAAGCTCATATA
JMSF021K16+           CACCCGTTCGATCCTCTCAGCATCCAACACCGAGTACTGGCTCGCCGGCAAGCTCATATA
                      ____________________________________________________________
consensus             CACCCGTTCGATCCTCTCAGCATCCAACACCGAGTACTGGCTCGCCGGCAAGCTCATATA
 
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rJMSF003A04-          CTCCATCAGAGGTCTCTGAAGCTGCCGCACCGACACGGATTCCTTCCGGCGAGCAATGAA
rJMSF021K16-          CTCCATCAGAGGTCTCTGAAGCTGCCGCACCGACACGGATTCCTTCCGGCGAGCAATGAA
JMSF021K16+           CTCCATCAGAGGTCTCTGAAGCTGCCGCACCGACACGGATTCCTTCCGGCGAGCAATGAA
JMSF003A04+              CATCAGAGGTCTCTGAAGCTGCCGCACCGACACGGATTCCTTCCGGCGAGCAATGAA
                      ____________________________________________________________
consensus             CTCCATCAGAGGTCTCTGAAGCTGCCGCACCGACACGGATTCCTTCCGGCGAGCAATGAA
 
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rJMSF003A04-          TCGAACTTTCGGTGCTGCGTCGGCGGAAATGCGAAGCGATCCTCTCGGAGAATCGTAGGA
rJMSF021K16-          TCGAACTTTCGGTGCTGCGTCGGCGGAAATGCGAAGCGATCCTCTCGGAGAATCGTAGGA
JMSF021K16+           TCGAACTTTCGGTGCTGCGTCGGCGGAAATGCGAAGCGATCCTCTCGGAGAATCGTAGGA
JMSF003A04+           TCGAACTTTCGGTGCTGCGTCGGCGGAAATGCGAAGCGATCCTCTCGGAGAATCGTAGGA
                      ____________________________________________________________
consensus             TCGAACTTTCGGTGCTGCGTCGGCGGAAATGCGAAGCGATCCTCTCGGAGAATCGTAGGA
 
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rJMSF021K16-          GGGAGGAGACGTTAAGCTTAACAGAGCAACTGGTGGACAGACTTTAGGGTTTTTGAATCG
JMSF021K16+           GGGAGGAGACGTTAAGCTTAACAGAGCAACTGGTGGACAGACTTTAGGGTTTTTGAATCG
JMSF003A04+           GGGAGGAGACGTTAAGCTTAACAGAGCAACTGGTGGACAGACTTTAGGGTTTTTGAATCG
                      ____________________________________________________________
consensus             GGGAGGAGACGTTAAGCTTAACAGAGCAACTGGTGGACAGACTTTAGGGTTTTTGAATCG
 
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rJMSF021K16-          GAATGAAACGTAACTCA                                           
JMSF021K16+           GAATGAAACGTAACTCAAATTTGTTGTTGAAGATGAAGTAGCGGCTAAGCTCAACGCCAT
JMSF003A04+           GAATGAAACGTAACTCAAATTTGTTGTTGAAGATGAAGTAGCGGCTAAGCTCAACGCCAT
                      ____________________________________________________________
consensus             GAATGAAACGTAACTCAAATTTGTTGTTGAAGATGAAGTAGCGGCTAAGCTCAACGCCAT
 
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JMSF021K16+           TTCCGATTGCTTCACTCCAATTGTTGGGAAAATGAGATATCAGAAACT            
JMSF003A04+           TTCCGATTGCTTCACTCCAATTGTTGGGAAAATGAGATATCAGAAACTGACCTTTTCACC
                      ____________________________________________________________
consensus             TTCCGATTGCTTCACTCCAATTGTTGGGAAAATGAGATATCAGAAACTGACCTTTTCACC