Contig 011871:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002E24Sequence405011871 (5)ref|XP_010654405.1|2e-13PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi547008293 (6)ref|XP_009345512.1|5e-42PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Py
JMSF002H17Sequence416011871 (5)ref|XP_010654405.1|1e-28PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi172008293 (6)ref|XP_010477131.1|3e-07PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like iso
JMSF010L13Sequence419011871 (5)ref|XP_010654405.1|3e-23PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi101008293 (6)ref|XP_009343350.1|6e-04PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like isof
JMSF027K03Sequence556011871 (5)ref|XP_010654405.1|1e-44PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi
JMSF049M05Sequence623011871 (5)ref|XP_010654405.1|3e-44PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi403008293 (6)gb|AAW31716.1|1e-35plastid beta-ketoacyl ACP synthase [Betula pendula]

Alignment

This contig is upended


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JMSF027K03+                                           TCTCTGTAATGGGTTTTTTCTTCGACAA
JMSF049M05+                                             TCTGTAATGGGTTTTTTCTTCGACAA
                      ____________________________________________________________
consensus                                             TCTCTGTAATGGGTTTTTTCTTCGACAA
 
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JMSF027K03+           TGCTTCCTTTTCAGGTTGCACAGCCACAGCCATTGTTTTACCAGAATGAGCAGCCTTGTT
JMSF049M05+           TGCTTCCTTTTCAGGTTGCACAGCCACAGCCATTGTTTTACCAGAATGAGCAGCCTTGTT
                      ____________________________________________________________
consensus             TGCTTCCTTTTCAGGTTGCACAGCCACAGCCATTGTTTTACCAGAATGAGCAGCCTTGTT
 
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JMSF027K03+           CATCCGCCTCTGTCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
JMSF010L13+                                                             ACAAGGCATT
JMSF002H17+                       TCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
JMSF049M05+           CATCCGCCTCTGTCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
                      ____________________________________________________________
consensus             CATCCGCCTCTGTCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
 
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JMSF027K03+           GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
JMSF010L13+           GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
JMSF002H17+           GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
JMSF049M05+           GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
                      ____________________________________________________________
consensus             GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
 
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JMSF027K03+           GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF010L13+           GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF002H17+           GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF049M05+           GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF002E24+                          TCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
                      ____________________________________________________________
consensus             GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
 
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JMSF027K03+           AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF010L13+           AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF002H17+           AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF049M05+           AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF002E24+           AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
                      ____________________________________________________________
consensus             AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
 
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JMSF027K03+           CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF010L13+           CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF002H17+           CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF049M05+           CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF002E24+           CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
                      ____________________________________________________________
consensus             CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
 
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JMSF027K03+           CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF010L13+           CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF002H17+           CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF049M05+           CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF002E24+           CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
                      ____________________________________________________________
consensus             CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
 
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JMSF027K03+           GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF010L13+           GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF002H17+           GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF049M05+           GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF002E24+           GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
                      ____________________________________________________________
consensus             GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
 
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JMSF027K03+           CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGC             
JMSF010L13+           CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGC             
JMSF002H17+           CCCA                                                        
JMSF049M05+           CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGCAATGAATTAAGTC
JMSF002E24+           CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGCAATGAATTAAGTC
                      ____________________________________________________________
consensus             CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGCAATGAATTAAGTC
 
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JMSF049M05+           AAGAAACGTTGGGATTTCAAGAAATGCTGGAGATAGTGATGAGAAAGGTGATCTC     
JMSF002E24+           AAGAAACGTTGGGATTTCAAGAAATGCTGGAGATAGTGATGAGAAAGGTGATCTCGAGCC
                      ____________________________________________________________
consensus             AAGAAACGTTGGGATTTCAAGAAATGCTGGAGATAGTGATGAGAAAGGTGATCTCGAGCC