Contig 011871:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002E24Sequence405011871 (5)ref|XP_010654405.1|2e-13PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi547008293 (6)ref|XP_009345512.1|5e-42PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Py
JMSF002H17Sequence416011871 (5)ref|XP_010654405.1|1e-28PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi172008293 (6)ref|XP_010477131.1|3e-07PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like iso
JMSF010L13Sequence419011871 (5)ref|XP_010654405.1|3e-23PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi101008293 (6)ref|XP_009343350.1|6e-04PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like isof
JMSF027K03Sequence556011871 (5)ref|XP_010654405.1|1e-44PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi
JMSF049M05Sequence623011871 (5)ref|XP_010654405.1|3e-44PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vi403008293 (6)gb|AAW31716.1|1e-35plastid beta-ketoacyl ACP synthase [Betula pendula]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF027K03+ TCTCTGTAATGGGTTTTTTCTTCGACAA
JMSF049M05+ TCTGTAATGGGTTTTTTCTTCGACAA
                      ____________________________________________________________
consensus TCTCTGTAATGGGTTTTTTCTTCGACAA
 
. : . : . : . : . : . :
JMSF027K03+ TGCTTCCTTTTCAGGTTGCACAGCCACAGCCATTGTTTTACCAGAATGAGCAGCCTTGTT
JMSF049M05+ TGCTTCCTTTTCAGGTTGCACAGCCACAGCCATTGTTTTACCAGAATGAGCAGCCTTGTT
                      ____________________________________________________________
consensus TGCTTCCTTTTCAGGTTGCACAGCCACAGCCATTGTTTTACCAGAATGAGCAGCCTTGTT
 
. : . : . : . : . : . :
JMSF027K03+ CATCCGCCTCTGTCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
JMSF010L13+ ACAAGGCATT
JMSF002H17+ TCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
JMSF049M05+ CATCCGCCTCTGTCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
                      ____________________________________________________________
consensus CATCCGCCTCTGTCTGCGATTCACGGGCGCCAGCTTGAACCCGAACAGGGACAAGGCATT
 
. : . : . : . : . : . :
JMSF027K03+ GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
JMSF010L13+ GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
JMSF002H17+ GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
JMSF049M05+ GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
                      ____________________________________________________________
consensus GTCCCCAAAGAATGGCAGCCCCTTAGAATTGTAGTACTCCTGACAAGGCTCGAAAGCGAA
 
. : . : . : . : . : . :
JMSF027K03+ GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF010L13+ GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF002H17+ GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF049M05+ GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
JMSF002E24+ TCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
                      ____________________________________________________________
consensus GCAAGAGCTCATCAATCCGTGAATACCAGATCCATAGAGAGAAGAGACGAAGCCGCCACC
 
. : . : . : . : . : . :
JMSF027K03+ AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF010L13+ AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF002H17+ AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF049M05+ AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
JMSF002E24+ AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
                      ____________________________________________________________
consensus AAGGTTGCCGCTCCAGGCCAGAGTTCTCTTCCTCCGCAGCCACCTCGGGGACTGGAAGAT
 
. : . : . : . : . : . :
JMSF027K03+ CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF010L13+ CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF002H17+ CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF049M05+ CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
JMSF002E24+ CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
                      ____________________________________________________________
consensus CGACGGCGACTTCCCCCGGTGGTCCTTTTCACAGGCCGCCGACATGCAAGCTGCCACGAG
 
. : . : . : . : . : . :
JMSF027K03+ CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF010L13+ CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF002H17+ CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF049M05+ CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
JMSF002E24+ CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
                      ____________________________________________________________
consensus CCATGTACAGAGCGGAGAGGCGACAGAAGAAGCCACCATTGCTGACAAAAAAGAGGAAAG
 
. : . : . : . : . : . :
JMSF027K03+ GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF010L13+ GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF002H17+ GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF049M05+ GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
JMSF002E24+ GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
                      ____________________________________________________________
consensus GAAAAAAAGAAGTGGGAAAATCCAGAAAATGGGAATAGAAATAGAGGGGAATGGAAGGGA
 
. : . : . : . : . : . :
JMSF027K03+ CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGC
JMSF010L13+ CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGC
JMSF002H17+ CCCA
JMSF049M05+ CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGCAATGAATTAAGTC
JMSF002E24+ CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGCAATGAATTAAGTC
                      ____________________________________________________________
consensus CCCAGATAGGAAATTGGGAATCTTGGAGGGGTTTTAGCAAGAAATGCAATGAATTAAGTC
 
. : . : . : . : . : . :
JMSF049M05+ AAGAAACGTTGGGATTTCAAGAAATGCTGGAGATAGTGATGAGAAAGGTGATCTC
JMSF002E24+ AAGAAACGTTGGGATTTCAAGAAATGCTGGAGATAGTGATGAGAAAGGTGATCTCGAGCC
                      ____________________________________________________________
consensus AAGAAACGTTGGGATTTCAAGAAATGCTGGAGATAGTGATGAGAAAGGTGATCTCGAGCC