Contig 011864:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001A13Sequence158011864 (6)
JMSF004L12Sequence384011864 (6)ref|XP_004237937.1|8e-17PREDICTED: formin-like protein 3 [Solanum lycopersicum]
JMSF044I09Sequence760011864 (6)ref|XP_004237937.1|2e-36PREDICTED: formin-like protein 3 [Solanum lycopersicum]674011864 (6)ref|XP_006363283.1|7e-07PREDICTED: bromodomain-containing protein 4-like [Solanum tuberosum]
JMSF044I10Sequence790011864 (6)ref|XP_004237937.1|2e-37PREDICTED: formin-like protein 3 [Solanum lycopersicum]762011864 (6)ref|XP_006363283.1|1e-09PREDICTED: bromodomain-containing protein 4-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF044I09-               TAGCATTCATTCATTTACAGAGAACAAAAGTAACTATAGAGCGAGTCAAATTTTA
rJMSF044I10-                AGCATTCATTCATTTACAGAGAACAAAAGTAACTATAGAGCGAGTCAAATTTTA
                      ____________________________________________________________
consensus                  TAGCATTCATTCATTTACAGAGAACAAAAGTAACTATAGAGCGAGTCAAATTTTA
 
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rJMSF044I09-          ACATTTTTCACCTTGGAAATAAATGTACATGTTCCTTCCTCCAATCTTCTTCTTCTTCTA
rJMSF044I10-          ACATTTTTCACCTTGGAAATAAATGTACATGTTCCTTCCTCCAATCTTCTTCTTCTTCTA
                      ____________________________________________________________
consensus             ACATTTTTCACCTTGGAAATAAATGTACATGTTCCTTCCTCCAATCTTCTTCTTCTTCTA
 
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rJMSF044I09-          CCACTACTTTTACTGTAGTATATTTCAACAAATTAAACCCTAAAAATCTTACCTTTTCTT
rJMSF044I10-          CCACTACTTTTACTGTAGTATATTTCAACAAATTAAACCCTAAAAATCTTACCTTTTCTT
                      ____________________________________________________________
consensus             CCACTACTTTTACTGTAGTATATTTCAACAAATTAAACCCTAAAAATCTTACCTTTTCTT
 
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rJMSF044I09-          TGTATTGGACTGGAATTCTTCAAATACCTTTCCAGGTTGGGCTAGAAACAGGAACCGTCG
rJMSF044I10-          TGTATTGGACTGGAATTCTTCAAATACCTTTCCAGGTTGGGCTAGAAACAGGAACCGTCG
                      ____________________________________________________________
consensus             TGTATTGGACTGGAATTCTTCAAATACCTTTCCAGGTTGGGCTAGAAACAGGAACCGTCG
 
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rJMSF044I09-          GAGACAGGGGGAGCTGCGGGAACCCTAGTTGACCCGCCGGTGAAAACAGCAGATTTGGTG
rJMSF044I10-          GAGACAGGGGGAGCTGCGGGAACCCTAGTTGACCCGCCGGTGAAAACAGCAGATTTGGTG
                      ____________________________________________________________
consensus             GAGACAGGGGGAGCTGCGGGAACCCTAGTTGACCCGCCGGTGAAAACAGCAGATTTGGTG
 
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rJMSF044I09-          ACAGCAAGGCGCAGGGAGACCTCGGCGACGGCGACGGCAGGCAGCTAAAGGGCAGTGGAG
rJMSF044I10-          ACAGCAAGGCGCAGGGAGACCTCGGCGACGGCGACGGCAGGCAGCTAAAGGGCAGTGGAG
                      ____________________________________________________________
consensus             ACAGCAAGGCGCAGGGAGACCTCGGCGACGGCGACGGCAGGCAGCTAAAGGGCAGTGGAG
 
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rJMSF044I09-          AAGACGGCATAGCAGGAAATTGCGGTAAGATTGCGGCGGATGATGGCTGAGGTGGTGGCG
rJMSF044I10-          AAGACGGCATAGCAGGAAATTGCGGTAAGATTGCGGCGGATGATGGCTGAGGTGGTGGCG
JMSF044I10+                                      AGATTGCGGCGGATGATGGCTGAGGTGGTGGCG
JMSF044I09+                                                                    GCG
                      ____________________________________________________________
consensus             AAGACGGCATAGCAGGAAATTGCGGTAAGATTGCGGCGGATGATGGCTGAGGTGGTGGCG
 
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rJMSF044I09-          GAGGAGGAGGAAGAGGAGGAGCGAAGGTGTTCCATCGCGGCGAAGCAAGCGGGGCGAGCG
rJMSF044I10-          GAGGAGGAGGAAGAGGAGGAGCGAAGGTGTTCCATCGCGGCGAAGCAAGCGGGGCGAGCG
JMSF044I10+           GAGGAGGAGGAAGAGGAGGAGCGAAGGTGTTCCATCGCGGCGAAGCAAGCGGGGCGAGCG
JMSF044I09+           GAGGAGGAGGAAGAGGAGGAGCGAAGGTGTTCCATCGCGGCGAAGCAAGCGGGGCGAGCG
                      ____________________________________________________________
consensus             GAGGAGGAGGAAGAGGAGGAGCGAAGGTGTTCCATCGCGGCGAAGCAAGCGGGGCGAGCG
 
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rJMSF044I09-          GGGGAAGCCCGGTGGAGAAGCGCTTGGAATCGGAGTCAGCGGCGGTGGCGGCGAAAGAGG
rJMSF044I10-          GGGGAAGCCCGGTGGAGAAGCGCTTGGAATCGGAGTCAGCGGCGGTGGCGGCGAAAGAGG
JMSF044I10+           GGGGAAGCCCGGTGGAGAAGCGCTTGGAATCGGAGTCAGCGGCGGTGGCGGCGAAAGAGG
JMSF044I09+           GGGGAAGCCCGGTGGAGAAGCGCTTGGAATCGGAGTCAGCGGCGGTGGCGGCGAAAGAGG
                      ____________________________________________________________
consensus             GGGGAAGCCCGGTGGAGAAGCGCTTGGAATCGGAGTCAGCGGCGGTGGCGGCGAAAGAGG
 
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rJMSF044I09-          TGTGGAGGAACCTCATGTACGCGGAGATCGGCGACTCGGCCGCCGCGTGTACGGCGGGAA
rJMSF044I10-          TGTGGAGGAACCTCATGTACGCGGAGATCGGCGACTCGGCCGCCGCGTGTACGGCGGGAA
JMSF044I10+           TGTGGAGGAACCTCATGTACGCGGAGATCGGCGACTCGGCCGCCGCGTGTACGGCGGGAA
JMSF044I09+           TGTGGAGGAACCTCATGTACGCGGAGATCGGCGACTCGGCCGCCGCGTGTACGGCGGGAA
                      ____________________________________________________________
consensus             TGTGGAGGAACCTCATGTACGCGGAGATCGGCGACTCGGCCGCCGCGTGTACGGCGGGAA
 
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rJMSF044I09-          ACGGCGGAAGAGGGGAAAGAGGCTGGGGTTGAGGAGGGCGTAGTCCAACGCCGACGAACC
rJMSF044I10-          ACGGCGGAAGAGGGGAAAGAGGCTGGGGTTGAGGAGGGCGTAGTCCAACGCCGACGAACC
JMSF044I10+           ACGGCGGAAGAGGGGAAAGAGGCTGGGGTTGAGGAGGGCGTAGTCCAACGCCGACGAACC
JMSF044I09+           ACGGCGGAAGAGGGGAAAGAGGCTGGGGTTGAGGAGGGCGTAGTCCAACGCCGACGAACC
                      ____________________________________________________________
consensus             ACGGCGGAAGAGGGGAAAGAGGCTGGGGTTGAGGAGGGCGTAGTCCAACGCCGACGAACC
 
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rJMSF044I09-          CTCCGCCGCCGCCCGGAAG                                         
rJMSF044I10-          CTCCGCCGCCGCCCGGAAGCAGGAGCGGAGGGCCGGCGACGGTCAACAGCGGAGATGGGG
JMSF044I10+           CTCCGCCGCCGCCCGGAAGCAGGAGCGGAGGGCCGGCGACGGTCAACAGCGGAGAT-GGG
JMSF044I09+           CTCCGCCGCCGCCCGGAAGCAGGAGCGGAGGGCCGGCGACGGTCAACAGCGGAGAT-GGG
                      ____________________________________________________________
consensus             CTCCGCCGCCGCCCGGAAGCAGGAGCGGAGGGCCGGCGACGGTCAACAGCGGAGAT-GGG
 
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rJMSF044I10-          CGGTTGCCTATTTGCACCAGCGNCGGAGGGCGAATCCTCTGCAACCTC            
JMSF044I10+           CGGTTGCCTATTTGCACCAGCGGCGGAGGGCGAATCCTCTGCAACCTCGAACTGGGCGGC
JMSF044I09+           CGGTTGCCTATTTGCACCAGCGGCGGAGGGCGAATCCTCTGCAACCTCGAACTGGGCGGC
                      ____________________________________________________________
consensus             CGGTTGCCTATTTGCACCAGCGGCGGAGGGCGAATCCTCTGCAACCTCGAACTGGGCGGC
 
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JMSF044I10+           TTGGGCTGGTGAATCGGCGGCGGAGTCGACATCCGCTCGTGCGCCGGAGATCCGGTGAGC
JMSF004L12+                                        CATCCGCTCGTGCGCCGGAGATCCGGTGAGC
JMSF044I09+           TTGGGCTGGTGAATCGGCGGCGGAGTCGACATCCGCTCGTGCGCCGGAGATCCGGTGAGC
                      ____________________________________________________________
consensus             TTGGGCTGGTGAATCGGCGGCGGAGTCGACATCCGCTCGTGCGCCGGAGATCCGGTGAGC
 
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JMSF044I10+           TTCTGAACCACGTCGCGAAAATCACTCTTGTTTATGTTATAAACCGGCGGCTGCTGCTGC
JMSF004L12+           TTCTGAACCACGTCGCGAAAATCACTCTTGTTTATGTTATAAACCGGCGGCTGCTGCTGC
JMSF044I09+           TTCTGAACCACGTCGCGAAAATCACTCTTGTTTATGTTATAAACCGGCGGCTGCTGCTGC
                      ____________________________________________________________
consensus             TTCTGAACCACGTCGCGAAAATCACTCTTGTTTATGTTATAAACCGGCGGCTGCTGCTGC
 
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JMSF044I10+           TGCTGAGGCGCCGCCGCCGCTTGCTGCTGCTGCAGGCTTTGAGCCACCGTATTCGCCGCC
JMSF004L12+           TGCTGAGGCGCCGCCGCCGCTTGCTGCTGCTGCAGGCTTTGAGCCACCGTATTCGCCGCC
JMSF044I09+           TGCTGAGGCGCCGCCGCCGCTTGCTGCTGCTGCAGGCTTTGAGCCACCGTATTCGCCGCC
                      ____________________________________________________________
consensus             TGCTGAGGCGCCGCCGCCGCTTGCTGCTGCTGCAGGCTTTGAGCCACCGTATTCGCCGCC
 
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JMSF044I10+           GTGGCAGGCTGCGATTGCTGGGGCTCTAACTGAGAGCTTTGAACAGTGTGAATCTCATAA
JMSF004L12+           GTGGCAGGCTGCGATTGCTGGGGCTCTAACTGAGAGCTTTGAACAGTGTGAATCTCATAA
JMSF044I09+           GTGGCAGGCTGCGATTGCTGGGGCTCTAACTGAGAGCTTTGAACAGTGTGAATCTCATAA
                      ____________________________________________________________
consensus             GTGGCAGGCTGCGATTGCTGGGGCTCTAACTGAGAGCTTTGAACAGTGTGAATCTCATAA
 
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JMSF044I10+           ACAGGGGGCTTCCGAATTGGTTTAGAGATCTTATGTGAAATCTTGTTCAGATGCTTCAAA
JMSF004L12+           ACAGGGGGCTTCCGAATTGGTTTAGAGATCTTATGTGAAATCTTGTTCAGATGCTTCAAA
JMSF044I09+           ACAGGGGGCTTCCGAATTGGTTTAGAGATCTTATGTGAAATCTTGTTCAGATGCTTCAAA
JMSF001A13+                                 TAGAGATCTTATGTGAAATCTTGTTCAGATGCTTCAAA
                      ____________________________________________________________
consensus             ACAGGGGGCTTCCGAATTGGTTTAGAGATCTTATGTGAAATCTTGTTCAGATGCTTCAAA
 
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JMSF044I10+           TACGCCGCAGTAGAAGAAGAGTCGCCGCCGCCGCCACCACTATCATCCCCGGAGGAATCA
JMSF004L12+           TACGCCGCAGTAGAAGAAGAGTCGCCGCCGCCGCCACCACTATCATCCCCGGAGGAATCA
JMSF044I09+           TACGCCGCAGTAGAAGAAGAGTCGCCGCCGCCGCCACCACTATCATCCCCGGAGGAATCA
JMSF001A13+           TACGCCGCAGTAGAAGAAGAGTCGCCGCCGCCGCCACCACTATCATCCCCGGAGGAATCA
                      ____________________________________________________________
consensus             TACGCCGCAGTAGAAGAAGAGTCGCCGCCGCCGCCACCACTATCATCCCCGGAGGAATCA
 
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JMSF044I10+           TACACTCTCTCCATATTTCCCCCTCTCTCTC                             
JMSF004L12+           TACACTCTCTCCATATTTCCCCCTCTCTCTC                             
JMSF044I09+           TACACTCTCTCCATATTTCCCCCTCTCTCTC                             
JMSF001A13+           TACACTCTCTCCATATTTCCCCCTCTCTCTCTCTCTCTAAAATTCACCTTCCTCTGTGTC
                      ____________________________________________________________
consensus             TACACTCTCTCCATATTTCCCCCTCTCTCTCTCTCTCTAAAATTCACCTTCCTCTGTGTC