Contig 011856:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS014H01+                                                         ACTGGCCTGGAGTT
                      ____________________________________________________________
consensus                                                           ACTGGCCTGGAGTT
 
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JMFS014H01+           CTGGGCAGGGTAAAAAGTACCATTCAAGACCTGACTGTTTGGGTGCTGGGTTTTGTTGTC
                      ____________________________________________________________
consensus             CTGGGCAGGGTAAAAAGTACCATTCAAGACCTGACTGTTTGGGTGCTGGGTTTTGTTGTC
 
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JMFS014H01+           TTTACTCCAGCAGCCAATGTAGCAGCTCCCGTCCGGCCAAGTGAAAACGCCGTGGCCTTT
                      ____________________________________________________________
consensus             TTTACTCCAGCAGCCAATGTAGCAGCTCCCGTCCGGCCAAGTGAAAACGCCGTGGCCTTT
 
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JMFS014H01+           GGGGACGCCGGTTTCCCAATTCCCGTCGTAACGGTTCCCATTTGCCCAAATCAAAACTCC
                      ____________________________________________________________
consensus             GGGGACGCCGGTTTCCCAATTCCCGTCGTAACGGTTCCCATTTGCCCAAATCAAAACTCC
 
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JMFS014H01+           CCGGCCGTGAATCATTCCGGTCTTCCATTCGCCGGCGTACTCGTTCCCGTTCTTCCACAT
                      ____________________________________________________________
consensus             CCGGCCGTGAATCATTCCGGTCTTCCATTCGCCGGCGTACTCGTTCCCGTTCTTCCACAT
 
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JMFS014H01+           ATACCTCCCTTGCCCGTCCTGTAAATTCCTCTTCCAATGCCCTTCATAGTAGTCGCCATT
                      ____________________________________________________________
consensus             ATACCTCCCTTGCCCGTCCTGTAAATTCCTCTTCCAATGCCCTTCATAGTAGTCGCCATT
 
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JMFS014H01+           GCTGTAGTTTTTCTGCCCAAACCCGTGTTTCCGATCCGCAGACCAGGCGCCTTTGTACAT
                      ____________________________________________________________
consensus             GCTGTAGTTTTTCTGCCCAAACCCGTGTTTCCGATCCGCAGACCAGGCGCCTTTGTACAT
 
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JMFS014H01+           GTCCCCGTCGGAGCCTATGAAGGTGCCGGTACCCTCCATCCGACCCGACTTGAATTCCCC
                      ____________________________________________________________
consensus             GTCCCCGTCGGAGCCTATGAAGGTGCCGGTACCCTCCATCCGACCCGACTTGAATTCCCC
 
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JMFS014H01+           CTGGAAGGTGGCCCCCGACGGCCACGAAAATTTCCCTTTCCCGGAGGCCTTCCCTCGCTT
                      ____________________________________________________________
consensus             CTGGAAGGTGGCCCCCGACGGCCACGAAAATTTCCCTTTCCCGGAGGCCTTCCCTCGCTT
 
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JMFS014H01+           CCACTCCCCTTCGTACATGCACCCATCCGTCCAAAGATACTTCCCGGATCCGTGAGGCGC
JMFS146C03+                          CATGCACCCATCCGTCCAAAGATACTTCCCGGATCCGTGAGGCGC
JMFS142D01+                          CATGCACCCATCCGTCCAAAGATACTTCCCGGATCCGTGAGGCGC
JMFS021E12+                                                                GAGGCGC
JMFS021E11+                                                   TTCCCGGATCCGTGAGGCGC
                      ____________________________________________________________
consensus             CCACTCCCCTTCGTACATGCACCCATCCGTCCAAAGATACTTCCCGGATCCGTGAGGCGC
 
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JMFS014H01+           GTTGCCGGAGAAGTCCCCGATATACAGATCCCCGTTGGGGAGGTGCTTTTCTACCACGGC
JMFS146C03+           GTTGCCGGAGAAGTCCCCGATATACAGATCCCCGTTGGGGAGGTGCTTTTCTACAACGGC
JMFS142D01+           GTTGCCGGAGAAGTCCCCGATATACAGATCCCCGTTGGGGAGGTGCTTTTCTACCACGGC
JMFS021E12+           GTTGCCGGAGAAGTCCCCGATATACAGATCNCCGTTGGGGAGGTGCTTTTCTACCACGGC
JMFS021E11+           GTGCCCGGAGAAGTCCCCGATATACAGATCNCCGTTGGGGAGGTGCTTTTCTACCACGGC
                      ____________________________________________________________
consensus             GTTGCCGGAGAAGTCCCCGATATACAGATCCCCGTTGGGGAGGTGCTTTTCTACCACGGC
 
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JMFS014H01+           CTCCACAGTA                                                  
JMFS146C03+           CTCCACAGTAGCAACGGTGATGGCACCAGTAGTCGGAGTGACTCTCCGGGAGGCGGCCTG
JMFS142D01+           CTCCACAGTAGCAACGGTGATGGCACCAGTAGTCGGAGTGACTCTCCGGGAGGCGGCCTG
JMFS021E12+           CTCCACAGTAGCAACGGTGATGGCACCAGTAGTCGGAGTGACTCTCCGGGAGGCGGCCTG
JMFS021E11+           CTCCACAGTAGCAACGGTGATGGCACCAGTAGTCGGAGTGACTCTCCGGGAGGCGGCCTG
JMFS154G05+                                                                     TG
                      ____________________________________________________________
consensus             CTCCACAGTAGCAACGGTGATGGCACCAGTAGTCGGAGTGACTCTCCGGGAGGCGGCCTG
 
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JMFS146C03+           AGATTTGCTCCGAGGAATAATAATAACAGAACTCGACATCGTACTGGCGGTAGTAACATC
JMFS142D01+           AGATTTGCTCCGAGGAATAATAATAACAGAACTCGACATCGTACTGGCGGTAGTAACATC
JMFS021E12+           AGATTTGCTCCGAGGAATAATAATAACAGAACTCGACATCGTACTGGCGGTAGTAACATC
JMFS021E11+           AGATTTGCTCCGAGGAATAATAATAACAGAACTCGACATCGTACTGGCGGTAGTAACATC
JMFF023K13+                                                    TACTGGCGGTAGTAACATC
JMFS154G05+           AGATTTGCTCCGAGGAATAATAATAACAGAACTCGACATCGTACTGGCGGTAGTAACATC
                      ____________________________________________________________
consensus             AGATTTGCTCCGAGGAATAATAATAACAGAACTCGACATCGTACTGGCGGTAGTAACATC
 
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JMFS146C03+           TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTCTTCGTGGTGGGCATATC
JMFS142D01+           TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTCTTCGTGGTGGGCATATC
JMFS021E12+           TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTCTTCGTGGTGGGCATATC
JMFS021E11+           TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTCTTCGTGGTGGGCATATC
JMFF023K13+           TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTNTTCGTGGTGGGCATATC
JMFS154G05+           TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTNTTCGTGGTGGGCATATC
                      ____________________________________________________________
consensus             TAGAACCTTCCCTCTCTCCTCCTCCTCCTCGCCATCTCCCTTCTTCGTGGTGGGCATATC
 
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JMFS146C03+           ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
JMFS142D01+           ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
JMFS021E12+           ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
JMFS021E11+           ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
JMFF023K13+           ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
JMFS154G05+           ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
                      ____________________________________________________________
consensus             ATCCGTCGTTAACATCATCAATCCCAGAAACAAAACAACAACCTTTATCTACTCTCGCTA
 
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JMFS146C03+           TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
JMFS142D01+           TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
JMFS021E12+           TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
JMFS021E11+           TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
JMFF023K13+           TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
JMFS154G05+           TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
                      ____________________________________________________________
consensus             TGGAAGCAATAGTACCAGCGGTGGCTCGCGGCGGCGTAAATGGCAGCGCAATATCAACTA
 
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JMFS146C03+           CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
JMFS142D01+           CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
JMFS021E12+           CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
JMFS021E11+           CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
JMFF023K13+           CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
JMFS154G05+           CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
                      ____________________________________________________________
consensus             CCCCCGGAAACGAAAATGGGTATTGCAGTTGACAACCCAGGGTTTCACCTCCGGGAGCAT
 
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JMFS146C03+           ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
JMFS142D01+           ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
JMFS021E12+           ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
JMFS021E11+           ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
JMFF023K13+           ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
JMFS154G05+           ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
                      ____________________________________________________________
consensus             ATCCGGCGGCTTTTCTTTCTTTTCCTTCCCTTTCCTTATATAATCCGCCAACCCTTTCTC
 
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JMFS146C03+           TCTCTAAAGCAAAGCACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
JMFS142D01+           TCTCTAAAGCAAAACACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
JMFS021E12+           TCTCTAAAGCAAAACACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
JMFS021E11+           TCTCTAAAGCAAAACACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
JMFF023K13+           TCTCTAAAGCAAAACACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
JMFS154G05+           TCTCTAAAGCAAAACACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
                      ____________________________________________________________
consensus             TCTCTAAAGCAAAACACTCTGAAATAGAGAGAGGGACGGAGGGTATCGGGATTATTGAGA
 
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JMFS146C03+           GAAGACGAATCCTTAGAAAACAGAGAGAA                               
JMFS142D01+           GAAGACGAATCCTTAGAAAACAGAGAGAATAGAGAGAGTCA                   
JMFS021E12+           GAAGACGAATCCTTAGAAAACAGAGAGAATAGAGAGAGTCACAAGAAAGACAGAGAGAGA
JMFS021E11+           GAAGACGAATCCTTAGAAAACAGAGAGAATAGAGAGAGTCACAAGAAAGACAGAGAGAGA
JMFF023K13+           GAAGACGAATCCTTAGAAAACAGAGAGAATAGAGAGAGTCACAAGAAAGACAGAGAGAGA
JMFS154G05+           GAAGACGAATCCTTAGAAAACAGAGAGAATAGAGAGAGTCACAAGAAAGACAGAGAGAGA
                      ____________________________________________________________
consensus             GAAGACGAATCCTTAGAAAACAGAGAGAATAGAGAGAGTCACAAGAAAGACAGAGAGAGA
 
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JMFS021E12+           GAGAGA                                                      
JMFS021E11+           GAGAGA                                                      
JMFF023K13+           GAGAGAGAGAGAGAAAAC                                          
JMFS154G05+           GAGAGAGAGAGAGAAAACGAGCCAGGAGGAACGTAAAGAAGTAGTAGAAGCAGAGGGGTC
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAAAACGAGCCAGGAGGAACGTAAAGAAGTAGTAGAAGCAGAGGGGTC
 
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JMFS154G05+           GTGGTAGAGAGAGAAAATACTGTAAAAAAAAAACATAAAAATGTAAAGTAGAGAGAGAAA
                      ____________________________________________________________
consensus             GTGGTAGAGAGAGAAAATACTGTAAAAAAAAAACATAAAAATGTAAAGTAGAGAGAGAAA